Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RDV53_RS04410 Genome accession   NZ_CP133470
Coordinates   903293..904348 (-) Length   351 a.a.
NCBI ID   WP_005695051.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 898293..909348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS04365 (RDV53_04365) coaA 898602..899537 (-) 936 WP_005695046.1 type I pantothenate kinase -
  RDV53_RS04390 (RDV53_04390) tuf 900240..901424 (+) 1185 WP_005635637.1 elongation factor Tu -
  RDV53_RS04395 (RDV53_04395) - 901582..902400 (+) 819 WP_005695047.1 Cof-type HAD-IIB family hydrolase -
  RDV53_RS04400 (RDV53_04400) crcB 902401..902796 (+) 396 WP_005695048.1 fluoride efflux transporter CrcB -
  RDV53_RS04405 (RDV53_04405) recX 902771..903223 (-) 453 WP_032827499.1 recombination regulator RecX -
  RDV53_RS04410 (RDV53_04410) recA 903293..904348 (-) 1056 WP_005695051.1 recombinase RecA Machinery gene
  RDV53_RS04415 (RDV53_04415) - 904485..905327 (-) 843 WP_005695052.1 patatin family protein -
  RDV53_RS04420 (RDV53_04420) sxy/tfoX 905558..906226 (+) 669 WP_005695053.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37567.07 Da        Isoelectric Point: 4.9529

>NTDB_id=874438 RDV53_RS04410 WP_005695051.1 903293..904348(-) (recA) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLHENPAKSDEL
EAKLRAELVANPEQALMADIEQPTDDAESDF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=874438 RDV53_RS04410 WP_005695051.1 903293..904348(-) (recA) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCGCTCGCCGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCAAT
TATGAAATTGGGTGATACTCAAGCCCTTGATGTAGAATCTGTTTCAACTGGTTCTTTAGGTCTTGATGTCGCTCTTGGTA
TTGGTGGTTTACCAATGGGTCGTATTGTTGAAATTTTTGGACCTGAATCTTCTGGTAAAACAACTTTAACTTTATCTGTT
ATCGCTCAAGCACAAAAAGTAGGTAAAACTTGTGCGTTTATTGATGCGGAGCATGCGCTTGATCCTATTTATGCAGCAAA
ACTTGGTGTTGATGTTAAAGAACTTTTAGTCTCCCAGCCAGATAATGGTGAACAAGCACTTGAAATTTGTGATGCATTAG
TACGTTCTGGCGCTGTAGATGTCGTCATTGTGGACTCGGTTGCTGCACTTACCCCGAAAGCTGAAATTGAAGGCGAAATG
GGTGATTCACACATGGGTTTACAAGCGCGTTTAATGTCTCAAGCGCTACGTAAATTAACTGGTCAAATCAAAAATGCAAA
CTGCCTTGTTATCTTTATTAACCAAATTCGTATGAAAATAGGTGTCATGTTTGGTAACCCAGAAACCACAACTGGTGGTA
ACGCGCTAAAATTCTACTCTTCTGTTCGTTTAGATATCCGTCGTACTGGTTCAGTTAAAGATGGAGATGAGGTAATTGGT
AACGAAACTCGTGTTAAAGTCGTAAAAAATAAATTAGCAGCACCTTTCCGCCAAGTTGATTTCCAAATTCTTTACGGAGA
AGGGATTTCCAAAGCTGGAGAATTAATTGAACTCGGTGTTAAACACAAACTTGTTGAGAAATCTGGTGCGTGGTATGCAT
ATAACGGTGAAAAAATTGGTCAAGGTAAAGCTAATGCAATGAAATGGTTACATGAAAACCCTGCGAAATCAGACGAACTT
GAAGCGAAGCTTCGTGCTGAATTAGTCGCTAACCCAGAACAAGCATTAATGGCTGATATTGAACAACCTACCGATGACGC
AGAAAGTGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

76.522

98.291

0.752
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.522

98.291

0.752
  recA Glaesserella parasuis strain SC1401

75.872

98.006

0.744
  recA Pseudomonas stutzeri DSM 10701

74.128

98.006

0.726
  recA Acinetobacter baylyi ADP1

70.029

98.86

0.692
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae strain FA1090

74.923

92.023

0.689
  recA Ralstonia pseudosolanacearum GMI1000

73.041

90.883

0.664
  recA Acinetobacter baumannii D1279779

71.385

92.593

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

94.872

0.601
  recA Helicobacter pylori 26695

60.458

99.43

0.601
  recA Helicobacter pylori strain NCTC11637

59.885

99.43

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

66.234

87.749

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

90.313

0.575
  recA Streptococcus pneumoniae TIGR4

56.857

99.715

0.567
  recA Streptococcus pneumoniae Rx1

56.857

99.715

0.567
  recA Streptococcus pneumoniae D39

56.857

99.715

0.567
  recA Streptococcus pneumoniae R6

56.857

99.715

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

93.162

0.564
  recA Streptococcus mutans UA159

59.633

93.162

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.023

0.553
  recA Streptococcus mitis NCTC 12261

59.327

93.162

0.553
  recA Streptococcus mitis SK321

59.021

93.162

0.55
  recA Streptococcus pyogenes NZ131

58.537

93.447

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.462

92.593

0.541