Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RDV53_RS02875 Genome accession   NZ_CP133470
Coordinates   589671..591200 (+) Length   509 a.a.
NCBI ID   WP_005694706.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 584671..596200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS02850 (RDV53_02850) oppC 584994..585929 (+) 936 WP_005694700.1 oligopeptide ABC transporter permease OppC -
  RDV53_RS02855 (RDV53_02855) - 585939..586910 (+) 972 WP_005694702.1 ABC transporter ATP-binding protein -
  RDV53_RS02860 (RDV53_02860) oppF 586907..587905 (+) 999 WP_005694703.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  RDV53_RS02865 (RDV53_02865) - 587945..588814 (-) 870 WP_005694704.1 DUF535 family protein -
  RDV53_RS02870 (RDV53_02870) yihA 588927..589541 (+) 615 WP_032822378.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RDV53_RS02875 (RDV53_02875) comM 589671..591200 (+) 1530 WP_005694706.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RDV53_RS02880 (RDV53_02880) nfuA 591244..591828 (-) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  RDV53_RS02885 (RDV53_02885) - 591944..592633 (-) 690 WP_032822376.1 ComF family protein -
  RDV53_RS02890 (RDV53_02890) comE 592653..594035 (-) 1383 WP_005694710.1 type IV pilus secretin PilQ Machinery gene
  RDV53_RS02895 (RDV53_02895) - 594037..594420 (-) 384 WP_005694711.1 hypothetical protein -
  RDV53_RS02900 (RDV53_02900) - 594420..594962 (-) 543 WP_005694712.1 hypothetical protein -
  RDV53_RS02905 (RDV53_02905) - 594959..595474 (-) 516 WP_005694713.1 hypothetical protein -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55804.20 Da        Isoelectric Point: 9.8426

>NTDB_id=874431 RDV53_RS02875 WP_005694706.1 589671..591200(+) (comM) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQDKLPLASLLVQESAVRFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDSEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVIRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDSLFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=874431 RDV53_RS02875 WP_005694706.1 589671..591200(+) (comM) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGTCTCTTGCCATTGTTTATAGCCGTGCCTCAATGGGCGTACAAGCCCCTCTTGTTACCATTGAGGTACACTTAAGTAA
CGGAAAACCTGGATTTACCTTAGTTGGCCTACCCGAAAAAACTGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCATTAA
TGAATGCGCAGTTCAAATATCCTGCCAAACGCATCACCGTAAATCTTGCACCGGCTGATTTACCCAAAGAAGGGGGACGA
TTTGATTTACCCATTGCGATAGGTATCTTGGCTGCATCAGATCAATTAGATGGTAGCCGTTTAAAACAATTTGAATTCGT
TGGTGAACTCGCATTAACGGGTGAATTACGTGGCGTACACGGTGTCATTCCTGCCATTTTAGCAGCTCAAAAAGCGAAAC
GCGCACCCATTATCGCTTATCAAAATGCCAATGAGGCGTCGCTTGTCTCAGAGCAAGAGACTTATTTCGCTAAAAACCTT
TTAGAGGTCGTGCAATTCTTAAATAATCAAGATAAATTACCTTTGGCCTCATTACTTGTACAAGAAAGTGCAGTCAGATT
TTCAGCTAAAAATCACTTAGATTTGACGGATATTATTGGTCAGCAACATGCGAAACGAGCACTAACAATAGCTGCCGCAG
GTCAGCACAACCTACTCTTTTTAGGTCCTCCCGGTACAGGTAAAACTATGTTAGCAAGTCGTCTCACCGCATTACTCCCT
GAAATGACTGATTCAGAAGCCATTGAAACCGCTTCGGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGACCGTTTCGAGCACCACATCATAGTGCCTCTTTGCCAGCCTTAGTAGGTGGAGGAACCATTCCAAAACCAGGCG
AAATATCGCTCGCACATAATGGCGTACTTTTTCTTGATGAATTGCCTGAGTTTGAGCGTAAAGTACTGGATGCACTCCGC
CAGCCATTAGAAAGTGGAGAAATTATTATTTCGCGAGCCAATGCTAAAATCCAATTTCCTGCTCGCTTTCAATTAGTTGC
GGCGATGAATCCAAGTCCAACGGGGCATTATACTGGAACACATAACCGCACCTCGCCACAACAAGTGATACGTTATTTAA
ATCGCCTTTCTGGCCCATTTTTAGATCGTTTTGATTTATCCATTGAAGTGCCCCTTCTGCCACAAGGTAGCTTACAGAAT
ACTGGAGATAGAGGCGAAACAAGCCAACAAGTAAGAGAAAAAGTGTTAAAAGTGAGAGAAATTCAACTTGCTCGAGCAGG
CAAGATCAATGCATATCTTTCAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATTCACTATTTCTTGAGA
ATGCACTGAATAAGCTAGGGCTTTCAGTAAGAGCCTACCATCGAATTTTGAAAGTCTCACGCACAATTGCCGATTTGAAT
GGCGAAAAAGAGATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGGGCAATGGATCGGTTGTTACAGAAATTATC
TGCCGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

91.913

99.607

0.916
  comM Glaesserella parasuis strain SC1401

79.684

99.607

0.794
  comM Vibrio cholerae strain A1552

66.929

99.804

0.668
  comM Vibrio campbellii strain DS40M4

65.815

100

0.658
  comM Legionella pneumophila str. Paris

52.183

99.018

0.517
  comM Legionella pneumophila strain ERS1305867

52.183

99.018

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.266

100

0.475