Detailed information NTG0874433

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: RDV53_RS02890
• Genome accession: NZ_CP133470
• Coordinates: 592653..594035 (-)
• Length: 460 a.a.
• NCBI ID: WP_005694710.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae ATCC 33392 strain DSM 8978
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 587653..599035

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV53_RS02865 (RDV53_02865)	-	587945..588814 (-)	870	WP_005694704.1	DUF535 family protein	-
RDV53_RS02870 (RDV53_02870)	yihA	588927..589541 (+)	615	WP_032822378.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
RDV53_RS02875 (RDV53_02875)	comM	589671..591200 (+)	1530	WP_005694706.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
RDV53_RS02880 (RDV53_02880)	nfuA	591244..591828 (-)	585	WP_005694707.1	Fe-S biogenesis protein NfuA	-
RDV53_RS02885 (RDV53_02885)	-	591944..592633 (-)	690	WP_032822376.1	ComF family protein	-
RDV53_RS02890 (RDV53_02890)	comE	592653..594035 (-)	1383	WP_005694710.1	type IV pilus secretin PilQ	Machinery gene
RDV53_RS02895 (RDV53_02895)	-	594037..594420 (-)	384	WP_005694711.1	hypothetical protein	-
RDV53_RS02900 (RDV53_02900)	-	594420..594962 (-)	543	WP_005694712.1	hypothetical protein	-
RDV53_RS02905 (RDV53_02905)	-	594959..595474 (-)	516	WP_005694713.1	hypothetical protein	-
RDV53_RS02910 (RDV53_02910)	-	595458..596306 (-)	849	WP_005694714.1	pilus assembly protein PilM	-
RDV53_RS02915 (RDV53_02915)	-	596406..599018 (+)	2613	WP_005694715.1	penicillin-binding protein 1A	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 51136.71 Da
• Isoelectric Point: 7.1908

>NTDB_id=874433 RDV53_RS02890 WP_005694710.1 592653..594035(-) (comE) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MVKQKIKTKFGQFLMCFLILWTTYSVAENRVFSLRLKQAPIVATLQQLALEQNANLMIDDELEGTLSLQLDNVDFDRLLR
SVAKIKGLSFYQENDIYYLGKPSQHEQYSEKITEPMAISGESLPSETPLVSTTVKLHFAKASDVMKSLTTGSGSLLSPSG
TITFDDRSNVLLIQDDARSLKNIKKLIAELDKPIEQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVGGSLDANGFS
NISNNLNVNFATTVTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDT
QSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKGV
DKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMARKEKHFKQVEKVKK

Nucleotide

• Length: 1383 bp

>NTDB_id=874433 RDV53_RS02890 WP_005694710.1 592653..594035(-) (comE) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGGTAAAGCAGAAAATAAAAACAAAGTTTGGTCAGTTTTTAATGTGTTTTCTGATCCTATGGACAACTTATTCAGTGGC
AGAAAATCGCGTATTTTCACTTCGCTTAAAACAAGCTCCCATAGTAGCGACACTCCAACAACTTGCCCTTGAGCAAAATG
CCAATTTAATGATTGATGATGAGTTAGAAGGAACACTTTCATTACAATTAGATAACGTAGATTTTGATCGTTTATTGCGT
TCTGTTGCAAAAATCAAAGGGCTCTCTTTTTATCAAGAAAATGATATTTATTATTTAGGTAAGCCTTCTCAACATGAACA
ATATTCAGAGAAAATAACAGAACCTATGGCGATTAGCGGAGAAAGTTTGCCTAGTGAAACACCACTTGTGAGTACAACGG
TTAAACTGCATTTTGCTAAGGCTTCTGATGTGATGAAATCTTTAACCACAGGGAGCGGTTCTTTGCTTTCACCTAGCGGC
ACAATTACATTTGATGATCGAAGCAATGTATTACTGATTCAGGATGATGCACGTTCACTTAAAAATATCAAAAAATTAAT
TGCAGAGCTGGATAAACCTATTGAGCAAATTGTCATTGAAGCACGTATTGTGACGATTACCGATGAAAGCCTAAAAGAAT
TAGGTGTGCGTTGGGGCATTTTTAATCCTACTGAGGCAGCCCATCGAGTGGGTGGCAGTTTAGATGCGAATGGGTTTAGC
AATATCAGTAATAATTTAAATGTGAATTTTGCGACAACGGTCACGCCAGCTGGCTCATTAGCACTTCAAGTAGCCAAAAT
TAATGGTCGATTGTTAGATTTAGAATTGACCGCACTTGAACGTGAAAATAACGTAGAAATTATTGCAAGCCCTCGCTTAC
TCACGACCAATAAGAAAAGTGCAAGCATCAAACAAGGGACAGAAATTCCTTATGTGGTGACAAATGGGAAAAATGACACC
CAATCAGTAGAGTTTCGCGAGGCTGTCTTAGGATTGGAAGTCACGCCGCATATTTCGAAGGATAATAATATTTTATTGGA
TTTATTAGTGAGTCAAAATTCCCCAGGGAATCGCGTGGCTTACGGGCAAAATGAAGTCGTATCTATTGATAAACAAGAAA
TCAATACGCAAGTTTTTGCCAAAGATGGTGAAACAATTGTATTGGGTGGTGTATTCCACGATACGATCACGAAAGGTGTC
GATAAAGTACCATTATTGGGCGATATTCCAGGTATTAAGCGCTTATTCAGTAAGGAAAGTGAACGTCATCAAAAACGAGA
ACTCGTCATTTTTGTGACACCTCATATTTTAAAACAAGGTGAAAGAATGGAAATGGCTAGAAAAGAAAAGCATTTTAAGC
AAGTTGAAAAAGTGAAAAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (278-438)

• Bacterial type II/III secretion system short domain (Secretin_N) (133-196)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	72.829	97.609	0.711
comE	Haemophilus influenzae 86-028NP	71.938	97.609	0.702
comE	Glaesserella parasuis strain SC1401	54.374	91.957	0.5
pilQ	Vibrio campbellii strain DS40M4	41.667	93.913	0.391
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	41.981	92.174	0.387
pilQ	Vibrio cholerae strain A1552	41.981	92.174	0.387