Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | RCF74_RS06500 | Genome accession | NZ_CP133235 |
| Coordinates | 1333387..1333704 (+) | Length | 105 a.a. |
| NCBI ID | WP_031265988.1 | Uniprot ID | - |
| Organism | Staphylococcus equorum strain CCM | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1328387..1338704
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RCF74_RS06470 (RCF74_06450) | - | 1328525..1328725 (+) | 201 | WP_002512453.1 | YqgQ family protein | - |
| RCF74_RS06475 (RCF74_06455) | - | 1329315..1330301 (+) | 987 | WP_021339255.1 | glucokinase | - |
| RCF74_RS06480 (RCF74_06460) | - | 1330301..1330624 (+) | 324 | WP_021339254.1 | MTH1187 family thiamine-binding protein | - |
| RCF74_RS06485 (RCF74_06465) | - | 1330626..1331249 (+) | 624 | WP_069801557.1 | MBL fold metallo-hydrolase | - |
| RCF74_RS06490 (RCF74_06470) | comGA | 1331349..1332323 (+) | 975 | WP_021339253.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RCF74_RS06495 (RCF74_06475) | comGB | 1332295..1333362 (+) | 1068 | WP_021339252.1 | competence type IV pilus assembly protein ComGB | - |
| RCF74_RS06500 (RCF74_06480) | comGC | 1333387..1333704 (+) | 318 | WP_031265988.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RCF74_RS06505 (RCF74_06485) | - | 1333733..1334128 (+) | 396 | WP_256093294.1 | competence protein | - |
| RCF74_RS06510 (RCF74_06490) | comGF | 1334115..1334828 (+) | 714 | WP_021339249.1 | competence type IV pilus minor pilin ComGF | - |
| RCF74_RS06515 (RCF74_06495) | - | 1335035..1335508 (+) | 474 | WP_236593604.1 | shikimate kinase | - |
| RCF74_RS06520 (RCF74_06500) | gcvT | 1335687..1336778 (+) | 1092 | WP_119559860.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| RCF74_RS06525 (RCF74_06505) | gcvPA | 1336796..1338148 (+) | 1353 | WP_021339245.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11682.76 Da Isoelectric Point: 9.0676
>NTDB_id=872658 RCF74_RS06500 WP_031265988.1 1333387..1333704(+) (comGC) [Staphylococcus equorum strain CCM]
MKNLKKLFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTAGCEAQIKMINSQIEAYSLKYNKKPTSIDELVSEG
YINESQKRCKTGSTISINNGEAVAN
MKNLKKLFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTAGCEAQIKMINSQIEAYSLKYNKKPTSIDELVSEG
YINESQKRCKTGSTISINNGEAVAN
Nucleotide
Download Length: 318 bp
>NTDB_id=872658 RCF74_RS06500 WP_031265988.1 1333387..1333704(+) (comGC) [Staphylococcus equorum strain CCM]
TTGAAAAACTTAAAAAAACTATTTAATAAAGAAGCATTTACACTTATAGAAATGTTGCTTGTTTTATTAATCATAAGTTT
ATTGCTTATTTTAATCATACCTAACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAAGCTCAAATAAAAA
TGATAAACAGTCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAACATCAATCGATGAACTCGTCTCAGAAGGA
TATATTAATGAAAGTCAAAAGCGATGTAAAACTGGTTCGACAATTTCAATAAATAATGGTGAAGCAGTTGCTAACTAA
TTGAAAAACTTAAAAAAACTATTTAATAAAGAAGCATTTACACTTATAGAAATGTTGCTTGTTTTATTAATCATAAGTTT
ATTGCTTATTTTAATCATACCTAACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAAGCTCAAATAAAAA
TGATAAACAGTCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAACATCAATCGATGAACTCGTCTCAGAAGGA
TATATTAATGAAAGTCAAAAGCGATGTAAAACTGGTTCGACAATTTCAATAAATAATGGTGAAGCAGTTGCTAACTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
69.608 |
97.143 |
0.676 |
| comGC | Staphylococcus aureus N315 |
69.608 |
97.143 |
0.676 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
44.444 |
100 |
0.457 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.489 |
89.524 |
0.371 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
41.489 |
89.524 |
0.371 |
| comYC | Streptococcus mutans UA140 |
44.186 |
81.905 |
0.362 |
| comYC | Streptococcus mutans UA159 |
44.186 |
81.905 |
0.362 |