Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   RBH93_RS17610 Genome accession   NZ_CP133079
Coordinates   3845084..3845404 (+) Length   106 a.a.
NCBI ID   WP_115521677.1    Uniprot ID   -
Organism   Aeromonas veronii strain HS1906     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3840084..3850404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH93_RS17595 (RBH93_17595) yfbV 3840524..3840964 (-) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -
  RBH93_RS17600 (RBH93_17600) - 3841269..3842471 (+) 1203 WP_005349210.1 acetate kinase -
  RBH93_RS17605 (RBH93_17605) pta 3842526..3844706 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  RBH93_RS17610 (RBH93_17610) comE1/comEA 3845084..3845404 (+) 321 WP_115521677.1 ComEA family DNA-binding protein Machinery gene
  RBH93_RS17615 (RBH93_17615) galU 3845500..3846411 (+) 912 WP_139405564.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RBH93_RS17620 (RBH93_17620) - 3846625..3848022 (+) 1398 WP_047436211.1 peptide MFS transporter -
  RBH93_RS17625 (RBH93_17625) - 3848097..3849068 (-) 972 WP_307895450.1 response regulator -
  RBH93_RS17630 (RBH93_17630) - 3849309..3850007 (+) 699 WP_236367583.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11300.30 Da        Isoelectric Point: 9.6564

>NTDB_id=871672 RBH93_RS17610 WP_115521677.1 3845084..3845404(+) (comE1/comEA) [Aeromonas veronii strain HS1906]
MLMKKLSAVMLLACLPLFSQPVLAVDKAAPKQTTTAEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=871672 RBH93_RS17610 WP_115521677.1 3845084..3845404(+) (comE1/comEA) [Aeromonas veronii strain HS1906]
ATGCTGATGAAGAAGCTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGTAGATAA
GGCAGCGCCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGTCCGGCAAGCTGAACATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGGGACATGATAATAGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50

100

0.528
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio cholerae strain A1552

48.113

100

0.481
  comEA Vibrio cholerae C6706

48.113

100

0.481
  comEA Vibrio parahaemolyticus RIMD 2210633

44.33

91.509

0.406
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368