Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   RBI12_RS01735 Genome accession   NZ_CP133054
Coordinates   366757..368883 (+) Length   708 a.a.
NCBI ID   WP_017481729.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A774     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 361757..373883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS01715 (RBI12_01720) pilM 363680..364738 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  RBI12_RS01720 (RBI12_01725) pilN 364738..365379 (+) 642 WP_017481732.1 PilN domain-containing protein Machinery gene
  RBI12_RS01725 (RBI12_01730) pilO 365376..366155 (+) 780 WP_017481731.1 type 4a pilus biogenesis protein PilO Machinery gene
  RBI12_RS01730 (RBI12_01735) pilP 366167..366694 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  RBI12_RS01735 (RBI12_01740) pilQ 366757..368883 (+) 2127 WP_017481729.1 type IV pilus secretin PilQ Machinery gene
  RBI12_RS01740 (RBI12_01745) aroK 368895..369464 (+) 570 WP_002116987.1 shikimate kinase AroK -
  RBI12_RS01745 (RBI12_01750) aroB 369493..370575 (+) 1083 WP_017481728.1 3-dehydroquinate synthase -
  RBI12_RS01750 (RBI12_01755) - 370592..371461 (+) 870 WP_017481727.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76722.19 Da        Isoelectric Point: 6.7721

>NTDB_id=871531 RBI12_RS01735 WP_017481729.1 366757..368883(+) (pilQ) [Acinetobacter pittii strain A774]
MNHVFRQFSMGAVAIAIMQVASAQVSMTNIVPTQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLTQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQVVAKPVSASAMQIQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVKTLGSKIPTHLAKRLNVNDFATPVSTIESYNDKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKIVNTSSKPSNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIRLNYAKAADVLKLIEETRDGKTAVANRTAGSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLIDVQIKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQPARVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVNNGETVILGGVFEQTTSNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=871531 RBI12_RS01735 WP_017481729.1 366757..368883(+) (pilQ) [Acinetobacter pittii strain A774]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCGTCTGCACAGGTCAGCAT
GACTAATATTGTACCGACGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCATATCAGCTTGAGAATCCTTCACGTTTGATTTTAGACTTTAATAAAGCGCAGCAGAATTTAACACAGTCAAAAGTA
GCGATTGGAACGAATGAAGCGAGTTCGGTCGATGTAAGCTCCGATGATCAGCGTTCACGTTTAACTGTTAATTTGAAAGA
GGCAGGTGCTTTTACAACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAGGTTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAATCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGTCTTATTGTT
ATTGACCTGTTGGGGAGTAATACCCCTGTTGATGTGCAACAACAAGGCAGCAAAGTTGTAGTAAAAACTTTGGGTTCTAA
AATTCCTACTCATTTAGCTAAGCGCTTAAATGTAAATGATTTTGCAACGCCTGTTTCGACCATTGAATCTTATAATGATA
AAGGCAACGGTGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAATTAACCATC
AGTCTCAAGCGTCCTCAAGATAAAATTGTAAACACTTCATCTAAACCATCTAATTATTCTGGTAATAAGCTTTCTCTTGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAATTACTTGCTGATTTTACTGGCATTAATATGGTTGCGGCTGACAGTG
TGCAAGGTAACATCACTTTGCGTTTAAAAGATGTTCCATGGGATCAGGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGTAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCAGAAGACGATGAGGCAAAAGC
TTTAGCACAAACTATTAAATTAGCACCGATCCAAACAGATTATATTCGTTTGAATTATGCAAAAGCAGCAGATGTCCTTA
AACTAATTGAAGAGACTCGTGATGGCAAGACAGCTGTCGCAAATCGTACAGCAGGTTCAGACTCTCTTGCTTTAGAAAGC
TTATTAAGCTCAAGAGGTAGTGCTGTTGCCGATACGCGTACTAATACTTTGATTGTAAATGATACAGCCCAAAATATTGA
TAAAGTTCGTAAAATGATTGATTTGATTGATGTACAGATCAAACAAGTCATGGTGGAAGCTCGAATTGTAAGAGCCTCTA
CTTCTTTTACTAAAGAGCTCGGTGTTAAATGGGGAATATTATCGCAAGGGATTACCAACAATAATAATTTATTAGTTGGT
GGTAGCGAAACGACCTTATGGAATTTACGAGAGCCCAAAAAGGATGAGACTACGGGTGGTTATAAATACACGATTGAACG
TCCAGATAACTTAAATGTCGATTTAGGTGTAACCAATCCGGCTGGAAGTATTGCCTTTGGCTTGATTAGTATGTCTGATT
TTATGCTTGATCTCGAACTTTCTGCATTACAAGCTGATGGTTATGGTGAGGTGATTTCTACACCTAAAGTGATGACCGCA
GATAAACAACCTGCGAGAGTGGCAACAGGTCAACAAGTTCCTTATCAAACCACGACGAATTCTGCTGCGGGTGCCACAGC
AAGTACATCATTTAAAGATGCACTATTAAGCCTAGATGTTACCCCGAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TGGATATTTCTAAGGATTCTGTAGCTGGCGAAGCACCTAATGGTGAATTAATTTTAAATAAAAATAATATTAATACCAAT
GTACTCGTTAATAATGGTGAGACAGTCATTTTAGGAGGGGTGTTTGAGCAGACTACTTCTAATTCACAAACCAAGGTTCC
TTTCTTTGGAGACATTCCTGTCGTTGGGCGTTTATTTAGAAAAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTT
TCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

AMIN domain (AMIN)

(39-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

84.882

100

0.864
  pilQ Acinetobacter baumannii strain A118

84.743

100

0.863
  comQ Acinetobacter baylyi ADP1

73.566

100

0.743
  pilQ Pseudomonas aeruginosa PAK

39.829

99.294

0.395