Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RBI12_RS01720 Genome accession   NZ_CP133054
Coordinates   364738..365379 (+) Length   213 a.a.
NCBI ID   WP_017481732.1    Uniprot ID   A0A9X3QTN4
Organism   Acinetobacter pittii strain A774     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359738..370379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS01700 (RBI12_01705) - 359743..360075 (+) 333 WP_017481735.1 hypothetical protein -
  RBI12_RS01705 (RBI12_01710) rrmA 360078..360902 (+) 825 WP_081032088.1 putative RNA methyltransferase -
  RBI12_RS01710 (RBI12_01715) ponA 360957..363518 (-) 2562 WP_017481733.1 penicillin-binding protein PBP1a -
  RBI12_RS01715 (RBI12_01720) pilM 363680..364738 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  RBI12_RS01720 (RBI12_01725) pilN 364738..365379 (+) 642 WP_017481732.1 PilN domain-containing protein Machinery gene
  RBI12_RS01725 (RBI12_01730) pilO 365376..366155 (+) 780 WP_017481731.1 type 4a pilus biogenesis protein PilO Machinery gene
  RBI12_RS01730 (RBI12_01735) pilP 366167..366694 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  RBI12_RS01735 (RBI12_01740) pilQ 366757..368883 (+) 2127 WP_017481729.1 type IV pilus secretin PilQ Machinery gene
  RBI12_RS01740 (RBI12_01745) aroK 368895..369464 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23949.41 Da        Isoelectric Point: 5.4186

>NTDB_id=871528 RBI12_RS01720 WP_017481732.1 364738..365379(+) (pilN) [Acinetobacter pittii strain A774]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLV
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=871528 RBI12_RS01720 WP_017481732.1 364738..365379(+) (pilN) [Acinetobacter pittii strain A774]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGCGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGTG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

71.078

95.775

0.681