Detailed information NTG0867873

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: Q9317_RS00830
• Genome accession: NZ_CP132230
• Coordinates: 139347..140363 (+)
• Length: 338 a.a.
• NCBI ID: WP_003098804.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain BH15-2
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 134347..145363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9317_RS00820 (Q9317_00820)	-	138029..138394 (+)	366	WP_003098799.1	DUF1033 family protein	-
Q9317_RS00825 (Q9317_00825)	comYA	138455..139396 (+)	942	WP_003098801.1	competence type IV pilus ATPase ComGA	Machinery gene
Q9317_RS00830 (Q9317_00830)	comYB	139347..140363 (+)	1017	WP_003098804.1	competence type IV pilus assembly protein ComGB	Machinery gene
Q9317_RS00835 (Q9317_00835)	comGC/cglC	140364..140690 (+)	327	WP_003098806.1	competence type IV pilus major pilin ComGC	Machinery gene
Q9317_RS00840 (Q9317_00840)	comGD	140650..141078 (+)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
Q9317_RS00845 (Q9317_00845)	comGE	141050..141343 (+)	294	WP_031239176.1	competence type IV pilus minor pilin ComGE	-
Q9317_RS00850 (Q9317_00850)	comYF	141303..141752 (+)	450	WP_119773875.1	competence type IV pilus minor pilin ComGF	Machinery gene
Q9317_RS00855 (Q9317_00855)	comGG	141742..142095 (+)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
Q9317_RS00860 (Q9317_00860)	comYH	142157..143113 (+)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
Q9317_RS00865 (Q9317_00865)	-	143170..144366 (+)	1197	WP_003098816.1	acetate kinase	-
Q9317_RS00870 (Q9317_00870)	-	144489..144692 (+)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
Q9317_RS00875 (Q9317_00875)	-	144705..145157 (+)	453	WP_003098820.1	hypothetical protein	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 39194.38 Da
• Isoelectric Point: 9.6521

>NTDB_id=867873 Q9317_RS00830 WP_003098804.1 139347..140363(+) (comYB) [Streptococcus iniae strain BH15-2]
MDISLSKKSKQRKLSAKKQYQLMQLFHNLFASGFSLSEIVAFLEKSHLLEAKYLDRIKENLISGRSLAEMTRSLGYPDSI
VTQISFADIHGNTKESLFKIMHYLDKVAQVRKKTLEVLTYPLILLSFLIAIMFGLRHYLLPQIEESNGLTQFLTYFPLVF
LIFLILGLLLTFYLSIRWRKHSQLKQVKQFSRIPFLKDYISLYITAYFAREWGSLMGQGLELSSILTVMAKEQSPLVKEI
GQDMQAYFLEGGALHDKVLQYPFFQKELSLMIEYGDIKAKLGQELEIYAQLTWERFFSRLFQATQWIQPIIFLFVALIIV
CIYAAMLLPMYHSIGGSI

Nucleotide

• Length: 1017 bp

>NTDB_id=867873 Q9317_RS00830 WP_003098804.1 139347..140363(+) (comYB) [Streptococcus iniae strain BH15-2]
ATGGATATCTCACTGAGCAAGAAATCCAAACAGAGAAAATTATCAGCTAAAAAGCAGTATCAATTAATGCAACTCTTTCA
TAATTTATTTGCAAGTGGTTTTAGCTTATCTGAAATAGTGGCATTTTTAGAAAAAAGTCACTTATTGGAAGCAAAATACC
TTGATAGAATAAAAGAAAACCTCATCAGTGGACGAAGTTTAGCAGAAATGACTAGAAGTTTAGGTTATCCTGACAGTATT
GTAACGCAAATTAGTTTTGCAGATATTCATGGCAATACCAAGGAAAGCTTGTTTAAAATTATGCATTACCTTGATAAAGT
GGCACAAGTCAGGAAAAAAACATTAGAAGTCCTAACTTATCCTCTTATTTTGCTTAGTTTTTTAATAGCCATCATGTTTG
GCTTACGCCATTATCTGCTTCCTCAAATAGAGGAGTCTAATGGGCTTACTCAATTTTTGACTTACTTCCCTTTAGTTTTT
TTGATTTTCTTAATATTGGGATTGCTACTCACATTTTACTTGAGCATTAGGTGGCGAAAACACTCACAATTAAAACAAGT
CAAGCAGTTTAGTCGGATACCTTTTTTAAAAGACTATATTAGCCTATATATAACTGCCTATTTTGCGCGTGAATGGGGAA
GTTTAATGGGACAAGGCCTTGAGTTGAGTTCAATACTAACCGTTATGGCAAAAGAACAATCTCCTCTGGTAAAAGAAATC
GGCCAAGATATGCAGGCCTATTTTTTAGAGGGTGGTGCTTTGCATGACAAAGTGTTACAATACCCATTTTTTCAAAAGGA
ATTAAGCTTAATGATTGAATATGGAGATATCAAGGCTAAATTAGGTCAAGAATTAGAAATTTATGCTCAACTAACATGGG
AAAGATTCTTTAGCCGCTTATTTCAAGCGACACAATGGATTCAACCTATTATATTCTTATTTGTTGCACTTATTATTGTG
TGCATTTACGCGGCAATGCTTTTGCCCATGTATCATTCAATTGGAGGTTCTATATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (24-141)

• Type II secretion system (T2SS), protein F (T2SSF) (208-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	52.252	98.521	0.515
comYB	Streptococcus mutans UA159	52.252	98.521	0.515
comGB/cglB	Streptococcus mitis NCTC 12261	48.673	100	0.488
comGB/cglB	Streptococcus mitis SK321	48.204	98.817	0.476
comYB	Streptococcus gordonii str. Challis substr. CH1	48.048	98.521	0.473
comGB/cglB	Streptococcus pneumoniae Rx1	46.407	98.817	0.459
comGB/cglB	Streptococcus pneumoniae D39	46.407	98.817	0.459
comGB/cglB	Streptococcus pneumoniae R6	46.407	98.817	0.459
comGB/cglB	Streptococcus pneumoniae TIGR4	46.407	98.817	0.459
comGB	Lactococcus lactis subsp. cremoris KW2	43.544	98.521	0.429