Detailed information NTG0867875

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: Q9317_RS00850
• Genome accession: NZ_CP132230
• Coordinates: 141303..141752 (+)
• Length: 149 a.a.
• NCBI ID: WP_119773875.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain BH15-2
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 136303..146752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9317_RS00820 (Q9317_00820)	-	138029..138394 (+)	366	WP_003098799.1	DUF1033 family protein	-
Q9317_RS00825 (Q9317_00825)	comYA	138455..139396 (+)	942	WP_003098801.1	competence type IV pilus ATPase ComGA	Machinery gene
Q9317_RS00830 (Q9317_00830)	comYB	139347..140363 (+)	1017	WP_003098804.1	competence type IV pilus assembly protein ComGB	Machinery gene
Q9317_RS00835 (Q9317_00835)	comGC/cglC	140364..140690 (+)	327	WP_003098806.1	competence type IV pilus major pilin ComGC	Machinery gene
Q9317_RS00840 (Q9317_00840)	comGD	140650..141078 (+)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
Q9317_RS00845 (Q9317_00845)	comGE	141050..141343 (+)	294	WP_031239176.1	competence type IV pilus minor pilin ComGE	-
Q9317_RS00850 (Q9317_00850)	comYF	141303..141752 (+)	450	WP_119773875.1	competence type IV pilus minor pilin ComGF	Machinery gene
Q9317_RS00855 (Q9317_00855)	comGG	141742..142095 (+)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
Q9317_RS00860 (Q9317_00860)	comYH	142157..143113 (+)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
Q9317_RS00865 (Q9317_00865)	-	143170..144366 (+)	1197	WP_003098816.1	acetate kinase	-
Q9317_RS00870 (Q9317_00870)	-	144489..144692 (+)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
Q9317_RS00875 (Q9317_00875)	-	144705..145157 (+)	453	WP_003098820.1	hypothetical protein	-
Q9317_RS00880 (Q9317_00880)	-	145167..145823 (+)	657	WP_003098822.1	CPBP family intramembrane glutamic endopeptidase	-
Q9317_RS00885 (Q9317_00885)	proC	145857..146627 (-)	771	WP_003098824.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 149 a.a.
• Molecular weight: 16976.98 Da
• Isoelectric Point: 10.2834

>NTDB_id=867875 Q9317_RS00850 WP_119773875.1 141303..141752(+) (comYF) [Streptococcus iniae strain BH15-2]
MKSIKKSLALRKISLKAFTLLECMLALVILSGAILVYQGMTKSLFFNMSYLVENDQDKWLLFSQQLRAELTGARFEKVEN
NKLYVAKEGKQIAFGLSKQGDFRKTAANGHGYHPMLLDLKDAKISHHNKEITVSITWKSGLERVFLYAF

Nucleotide

• Length: 450 bp

>NTDB_id=867875 Q9317_RS00850 WP_119773875.1 141303..141752(+) (comYF) [Streptococcus iniae strain BH15-2]
GTGAAAAGCATCAAAAAGTCTTTAGCCTTAAGAAAAATTAGCCTCAAGGCATTTACGCTTTTAGAGTGTATGTTGGCCTT
AGTGATATTGTCAGGTGCCATCTTAGTTTATCAAGGAATGACAAAATCTTTATTTTTTAACATGTCTTATTTGGTTGAAA
ATGATCAGGACAAGTGGTTGTTGTTTTCACAACAGTTGAGAGCTGAGTTAACAGGAGCTCGGTTTGAGAAGGTCGAAAAT
AATAAACTTTACGTAGCAAAAGAAGGAAAGCAGATAGCTTTTGGACTTTCAAAACAAGGAGATTTTCGAAAAACAGCAGC
AAATGGTCATGGTTATCATCCCATGCTTCTGGATCTTAAAGATGCTAAGATTAGTCATCATAATAAGGAGATTACAGTAA
GTATCACTTGGAAAAGTGGGCTAGAAAGAGTCTTTCTTTATGCTTTTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (53-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	52.174	92.617	0.483
comYF	Streptococcus mutans UA159	51.449	92.617	0.477
comGF/cglF	Streptococcus pneumoniae D39	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae Rx1	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae R6	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae TIGR4	46.617	89.262	0.416
comGF/cglF	Streptococcus mitis NCTC 12261	45.865	89.262	0.409
comGF	Lactococcus lactis subsp. cremoris KW2	43.478	92.617	0.403
comGF/cglF	Streptococcus mitis SK321	44.361	89.262	0.396