Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   Q9317_RS00860 Genome accession   NZ_CP132230
Coordinates   142157..143113 (+) Length   318 a.a.
NCBI ID   WP_003098815.1    Uniprot ID   -
Organism   Streptococcus iniae strain BH15-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137157..148113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9317_RS00820 (Q9317_00820) - 138029..138394 (+) 366 WP_003098799.1 DUF1033 family protein -
  Q9317_RS00825 (Q9317_00825) comYA 138455..139396 (+) 942 WP_003098801.1 competence type IV pilus ATPase ComGA Machinery gene
  Q9317_RS00830 (Q9317_00830) comYB 139347..140363 (+) 1017 WP_003098804.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q9317_RS00835 (Q9317_00835) comGC/cglC 140364..140690 (+) 327 WP_003098806.1 competence type IV pilus major pilin ComGC Machinery gene
  Q9317_RS00840 (Q9317_00840) comGD 140650..141078 (+) 429 WP_003098807.1 competence type IV pilus minor pilin ComGD -
  Q9317_RS00845 (Q9317_00845) comGE 141050..141343 (+) 294 WP_031239176.1 competence type IV pilus minor pilin ComGE -
  Q9317_RS00850 (Q9317_00850) comYF 141303..141752 (+) 450 WP_119773875.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q9317_RS00855 (Q9317_00855) comGG 141742..142095 (+) 354 WP_003098812.1 competence type IV pilus minor pilin ComGG -
  Q9317_RS00860 (Q9317_00860) comYH 142157..143113 (+) 957 WP_003098815.1 class I SAM-dependent methyltransferase Machinery gene
  Q9317_RS00865 (Q9317_00865) - 143170..144366 (+) 1197 WP_003098816.1 acetate kinase -
  Q9317_RS00870 (Q9317_00870) - 144489..144692 (+) 204 WP_003098819.1 helix-turn-helix transcriptional regulator -
  Q9317_RS00875 (Q9317_00875) - 144705..145157 (+) 453 WP_003098820.1 hypothetical protein -
  Q9317_RS00880 (Q9317_00880) - 145167..145823 (+) 657 WP_003098822.1 CPBP family intramembrane glutamic endopeptidase -
  Q9317_RS00885 (Q9317_00885) proC 145857..146627 (-) 771 WP_003098824.1 pyrroline-5-carboxylate reductase -
  Q9317_RS00890 (Q9317_00890) pepA 146651..147718 (-) 1068 WP_003098826.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35968.86 Da        Isoelectric Point: 4.5568

>NTDB_id=867876 Q9317_RS00860 WP_003098815.1 142157..143113(+) (comYH) [Streptococcus iniae strain BH15-2]
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=867876 Q9317_RS00860 WP_003098815.1 142157..143113(+) (comYH) [Streptococcus iniae strain BH15-2]
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.192

99.686

0.67
  comYH Streptococcus mutans UA140

66.877

99.686

0.667