Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | NGH78_RS00775 | Genome accession | NZ_AP024620 |
| Coordinates | 141599..142066 (+) | Length | 155 a.a. |
| NCBI ID | WP_109208100.1 | Uniprot ID | - |
| Organism | Moorella sp. Hama-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 136599..147066
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGH78_RS00745 (hamaS1_01430) | yedF | 137552..138133 (+) | 582 | WP_109208094.1 | sulfurtransferase-like selenium metabolism protein YedF | - |
| NGH78_RS00750 (hamaS1_01440) | - | 138152..139063 (+) | 912 | WP_109208095.1 | HEAT repeat domain-containing protein | - |
| NGH78_RS00755 (hamaS1_01450) | - | 139387..139572 (+) | 186 | WP_109208096.1 | DUF951 domain-containing protein | - |
| NGH78_RS00760 (hamaS1_01460) | - | 139693..140202 (-) | 510 | WP_109208097.1 | CGGC domain-containing protein | - |
| NGH78_RS00765 (hamaS1_01470) | - | 140476..141063 (+) | 588 | WP_109208098.1 | Uma2 family endonuclease | - |
| NGH78_RS00770 (hamaS1_01480) | rpsF | 141280..141576 (+) | 297 | WP_109208099.1 | 30S ribosomal protein S6 | - |
| NGH78_RS00775 (hamaS1_01490) | ssbA | 141599..142066 (+) | 468 | WP_109208100.1 | single-stranded DNA-binding protein | Machinery gene |
| NGH78_RS00780 (hamaS1_01500) | rpsR | 142233..142460 (+) | 228 | WP_109208101.1 | 30S ribosomal protein S18 | - |
| NGH78_RS00785 (hamaS1_01510) | - | 142678..143664 (+) | 987 | WP_109208102.1 | YybS family protein | - |
| NGH78_RS00790 (hamaS1_01520) | rplI | 143670..144128 (+) | 459 | WP_109208103.1 | 50S ribosomal protein L9 | - |
| NGH78_RS00795 (hamaS1_01530) | lonC | 144156..146099 (+) | 1944 | WP_161955174.1 | Lon family ATP-dependent protease | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 16895.93 Da Isoelectric Point: 4.7980
>NTDB_id=86714 NGH78_RS00775 WP_109208100.1 141599..142066(+) (ssbA) [Moorella sp. Hama-1]
MLNRVILIGRLTRDPELRYTASGVAMTTFSLAVDRNYVNQQGERGTDFIRITVWRKLAEVCANHLGKGRLVAIEGRLQTR
SYETPEGQKRTVTDVVADDVRFLDWPKEGRGPASGTLSGAGPVTGSGMEVSGGGFNQDFSDIGTEVDMGDDDLPF
MLNRVILIGRLTRDPELRYTASGVAMTTFSLAVDRNYVNQQGERGTDFIRITVWRKLAEVCANHLGKGRLVAIEGRLQTR
SYETPEGQKRTVTDVVADDVRFLDWPKEGRGPASGTLSGAGPVTGSGMEVSGGGFNQDFSDIGTEVDMGDDDLPF
Nucleotide
Download Length: 468 bp
>NTDB_id=86714 NGH78_RS00775 WP_109208100.1 141599..142066(+) (ssbA) [Moorella sp. Hama-1]
ATGTTAAACCGGGTAATATTGATCGGCCGCCTCACCCGGGATCCGGAACTGCGGTATACGGCCAGCGGTGTGGCCATGAC
TACTTTTAGTCTGGCGGTAGATCGAAATTATGTCAACCAGCAGGGTGAACGGGGAACCGATTTCATCCGGATCACTGTCT
GGCGCAAGCTGGCGGAAGTCTGTGCTAACCACCTGGGTAAAGGCCGCCTGGTAGCCATTGAGGGTCGCCTGCAGACCCGC
TCCTACGAGACCCCCGAGGGCCAGAAACGTACGGTTACCGATGTAGTAGCCGACGATGTTCGCTTCCTGGACTGGCCCAA
GGAAGGACGAGGCCCGGCCTCCGGTACCCTTTCGGGAGCCGGCCCGGTAACAGGCAGCGGGATGGAGGTCTCTGGCGGCG
GCTTCAACCAGGACTTCAGCGATATTGGTACCGAAGTAGATATGGGAGACGACGATCTCCCCTTTTAG
ATGTTAAACCGGGTAATATTGATCGGCCGCCTCACCCGGGATCCGGAACTGCGGTATACGGCCAGCGGTGTGGCCATGAC
TACTTTTAGTCTGGCGGTAGATCGAAATTATGTCAACCAGCAGGGTGAACGGGGAACCGATTTCATCCGGATCACTGTCT
GGCGCAAGCTGGCGGAAGTCTGTGCTAACCACCTGGGTAAAGGCCGCCTGGTAGCCATTGAGGGTCGCCTGCAGACCCGC
TCCTACGAGACCCCCGAGGGCCAGAAACGTACGGTTACCGATGTAGTAGCCGACGATGTTCGCTTCCTGGACTGGCCCAA
GGAAGGACGAGGCCCGGCCTCCGGTACCCTTTCGGGAGCCGGCCCGGTAACAGGCAGCGGGATGGAGGTCTCTGGCGGCG
GCTTCAACCAGGACTTCAGCGATATTGGTACCGAAGTAGATATGGGAGACGACGATCTCCCCTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
46.243 |
100 |
0.516 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
42.353 |
100 |
0.465 |
| ssb | Neisseria meningitidis MC58 |
35.26 |
100 |
0.394 |
| ssb | Neisseria gonorrhoeae MS11 |
35.26 |
100 |
0.394 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
52.336 |
69.032 |
0.361 |