Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   Q7574_RS01615 Genome accession   NZ_CP131867
Coordinates   337290..339404 (+) Length   704 a.a.
NCBI ID   WP_342063565.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 2012N08-034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332290..344404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7574_RS01595 (Q7574_01595) pilM 334213..335271 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  Q7574_RS01600 (Q7574_01600) pilN 335271..335912 (+) 642 WP_342063563.1 PilN domain-containing protein Machinery gene
  Q7574_RS01605 (Q7574_01605) pilO 335909..336688 (+) 780 WP_342063564.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q7574_RS01610 (Q7574_01610) pilP 336700..337227 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  Q7574_RS01615 (Q7574_01615) pilQ 337290..339404 (+) 2115 WP_342063565.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7574_RS01620 (Q7574_01620) aroK 339416..339985 (+) 570 WP_060464991.1 shikimate kinase AroK -
  Q7574_RS01625 (Q7574_01625) aroB 340014..341096 (+) 1083 WP_151282584.1 3-dehydroquinate synthase -
  Q7574_RS01630 (Q7574_01630) - 341113..341982 (+) 870 WP_342063566.1 hypothetical protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 76380.63 Da        Isoelectric Point: 6.5419

>NTDB_id=865617 Q7574_RS01615 WP_342063565.1 337290..339404(+) (pilQ) [Acinetobacter pittii strain 2012N08-034]
MNHVFRQFSMGAVAIAITQVASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFNKAQQNFIQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAVAKPVSTSAAQPQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVKTLGSKIPTHLAKRLNVNDFATPVSTIESYNDKGNGIITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPHYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIRLNYAKAADVLKLIEDTRDSKTAVANRTANSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKLRKMIDLIDVQIKQVMVEARIVRASTSFTKELGVKWGILSQGVNSNNSLLVG
GSDTTLWNLKEPDSQGKYTIERPDNLNVDLGVTSAGASSIAFSLISMSDFMLDLELSALQADGYGEVISTPKVMTADKQR
AKVATGQQVPYQTTTNSASGSTATTAFKDALLSLDVTPSITPDGKIQMYLDISKDSVAGEAPNGELILNKNQINTNVLVN
NGETVILGGVFEQTTSNSQTKVPFFGDLPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=865617 Q7574_RS01615 WP_342063565.1 337290..339404(+) (pilQ) [Acinetobacter pittii strain 2012N08-034]
ATGAATCACGTATTCCGTCAGTTTTCGATGGGGGCTGTAGCGATTGCAATTACGCAAGTTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCGACGCAAATAGCGGGCCAAGGTACAGAAATTCGAGTTATGTTTAATGGCTTGCCGCCACAACCGC
AAGCATATCAACTTGAAAATCCTTCACGTTTGATTTTAGATTTTAATAAAGCGCAGCAGAATTTCATACAGTCAAAAGTA
GCGATTGGAACGAATGAAGCGAGTTCGGTCGATGTAAGCTCTGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACAACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAAGCTGTAGCTAAACCTG
TATCAACAAGTGCGGCGCAACCCCAAGGCGTTTCAAATATCGGCTTCCAACGCGGTAGCCAAGGGGAAGGTCTTATCGTT
ATTGACCTATTGGGAAGTAACACTCCTGTTGATGTGCAACAACAAGGCAGCAAAGTTGTAGTAAAAACTTTGGGTTCTAA
AATTCCTACTCATTTAGCTAAACGCTTAAATGTAAATGATTTTGCAACGCCTGTTTCGACCATTGAATCATATAATGATA
AAGGCAATGGTATTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCTGAAAATAAATTAACAATT
AGTCTCAAGCGTCCGCAGGACAAAAATGTAACCTCTTTATATAAGACACCTCATTATTCTGGTAATAAGCTGTCTCTTGA
TTTTCAAGATATTGAAGTCCGTCGAGTTTTACAATTACTTGCTGATTTTACTGGCATTAATATGGTTGCGGCTGACAGTG
TTCAAGGTAATATCACTTTGCGCTTAAAAGATGTTCCATGGGACCAAGCGCTTGATATTATTTTAAAGACTAAAAATCTA
GATAAACGAAGAAATGGAAATGTAATTTGGATTGCTCCAGTTGCAGAGTTGATTAAGGCAGAAGACGATGAAGCAAAAGC
TTTAGCACAAACGATTAAATTAGCACCGATCCAAACGGATTATATTCGTTTGAATTATGCAAAAGCAGCAGATGTACTTA
AGCTAATTGAAGATACCCGTGATAGCAAGACAGCTGTCGCAAACCGTACTGCGAATTCAGACTCTCTTGCTTTAGAAAGT
TTATTAAGTTCAAGAGGTAGCGCTGTTGCCGATACACGCACCAATACTTTGATTGTAAATGATACAGCCCAAAATATTGA
TAAACTTCGTAAAATGATTGATTTGATTGATGTGCAGATCAAACAAGTCATGGTTGAAGCTCGAATTGTAAGAGCCTCTA
CCTCTTTTACCAAAGAGCTTGGTGTTAAATGGGGAATATTATCTCAAGGAGTAAACAGTAATAACAGTTTGTTGGTAGGG
GGGAGTGATACAACGCTTTGGAACTTAAAAGAACCAGATAGTCAAGGTAAATATACGATTGAGCGGCCAGATAATTTAAA
CGTTGATTTAGGCGTTACATCTGCTGGAGCTAGTAGCATAGCTTTTAGTTTAATTAGTATGTCTGATTTTATGTTGGATT
TAGAGTTATCAGCATTGCAGGCAGATGGTTATGGTGAAGTGATTTCAACCCCTAAAGTGATGACTGCAGATAAACAACGA
GCAAAAGTGGCAACTGGTCAGCAAGTTCCATATCAAACTACAACTAATTCAGCTTCTGGTTCAACAGCTACAACTGCTTT
TAAAGATGCACTGTTAAGTTTGGATGTTACGCCAAGTATTACACCTGACGGTAAAATTCAAATGTACTTAGATATTTCTA
AGGATTCTGTAGCAGGTGAAGCACCTAATGGTGAATTGATTTTAAATAAAAATCAGATTAACACTAATGTACTCGTTAAT
AATGGGGAAACTGTTATTTTAGGGGGGGTGTTTGAGCAGACGACTTCTAATTCACAAACCAAGGTTCCTTTCTTTGGAGA
TCTGCCTGTAGTGGGGCGTTTATTTAGAAAAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTTTCGTTACGCCAC
GAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Bacterial type II and III secretion system protein (Secretin)

(538-696)

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(39-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

82.687

100

0.848
  pilQ Acinetobacter baumannii strain A118

82.548

100

0.847
  comQ Acinetobacter baylyi ADP1

73.98

100

0.747
  pilQ Pseudomonas aeruginosa PAK

39.459

99.716

0.393