Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q7574_RS01600 Genome accession   NZ_CP131867
Coordinates   335271..335912 (+) Length   213 a.a.
NCBI ID   WP_342063563.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 2012N08-034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330271..340912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7574_RS01580 (Q7574_01580) - 330315..330647 (+) 333 WP_002116981.1 hypothetical protein -
  Q7574_RS01585 (Q7574_01585) rrmA 330650..331474 (+) 825 WP_342063561.1 putative RNA methyltransferase -
  Q7574_RS01590 (Q7574_01590) ponA 331490..334051 (-) 2562 WP_342063562.1 penicillin-binding protein PBP1a -
  Q7574_RS01595 (Q7574_01595) pilM 334213..335271 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  Q7574_RS01600 (Q7574_01600) pilN 335271..335912 (+) 642 WP_342063563.1 PilN domain-containing protein Machinery gene
  Q7574_RS01605 (Q7574_01605) pilO 335909..336688 (+) 780 WP_342063564.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q7574_RS01610 (Q7574_01610) pilP 336700..337227 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  Q7574_RS01615 (Q7574_01615) pilQ 337290..339404 (+) 2115 WP_342063565.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7574_RS01620 (Q7574_01620) aroK 339416..339985 (+) 570 WP_060464991.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23997.44 Da        Isoelectric Point: 5.4054

>NTDB_id=865614 Q7574_RS01600 WP_342063563.1 335271..335912(+) (pilN) [Acinetobacter pittii strain 2012N08-034]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKQDKALSSLLPRVEDSYGSFVVTVDVGEIGVTTTNDTANTPVSTDKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=865614 Q7574_RS01600 WP_342063563.1 335271..335912(+) (pilN) [Acinetobacter pittii strain 2012N08-034]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCAGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACTCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAATTCTTTCTTGGCG
ACCGAAGAGAAACAAGATAAGGCTCTGAGTTCGTTGCTTCCTCGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATTGGGGTGACTACAACAAATGATACCGCCAATACGCCTGTAAGTACGGATAAGGAGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

86.854

100

0.869
  comN Acinetobacter baylyi ADP1

71.707

96.244

0.69