Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   WGK59_RS04055 Genome accession   NZ_CP148002
Coordinates   789496..792327 (+) Length   943 a.a.
NCBI ID   WP_015701476.1    Uniprot ID   -
Organism   Haemophilus influenzae strain AR2427     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 784496..797327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGK59_RS04020 (WGK59_04020) bamC 784575..785204 (-) 630 WP_038439193.1 outer membrane protein assembly factor BamC -
  WGK59_RS04025 (WGK59_04025) dapA 785315..786211 (-) 897 WP_061659718.1 4-hydroxy-tetrahydrodipicolinate synthase -
  WGK59_RS04030 (WGK59_04030) bcp 786312..786779 (+) 468 WP_015701479.1 thioredoxin-dependent thiol peroxidase -
  WGK59_RS04035 (WGK59_04035) exbB 786948..787400 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  WGK59_RS04040 (WGK59_04040) exbD 787404..787847 (+) 444 WP_005694050.1 TonB system transport protein ExbD -
  WGK59_RS04045 (WGK59_04045) - 787857..788657 (+) 801 WP_015701478.1 energy transducer TonB -
  WGK59_RS04050 (WGK59_04050) ssb 788835..789341 (-) 507 WP_015701477.1 single-stranded DNA-binding protein Machinery gene
  WGK59_RS04055 (WGK59_04055) uvrA 789496..792327 (+) 2832 WP_015701476.1 excinuclease ABC subunit UvrA Machinery gene
  WGK59_RS04060 - 792657..793453 (+) 797 Protein_770 S6 family peptidase -
  WGK59_RS04065 (WGK59_04060) - 793802..796855 (+) 3054 Protein_771 autotransporter outer membrane beta-barrel domain-containing protein -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104356.27 Da        Isoelectric Point: 7.0699

>NTDB_id=863602 WGK59_RS04055 WP_015701476.1 789496..792327(+) (uvrA) [Haemophilus influenzae strain AR2427]
MENIDIRGARTHNLKNINLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDSIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPDHNVPLTAQTISQMVDKVLSLPEDSKMMLLAPVVKNRKG
EHLKILENIAAQGYIRARIDGEICDLSDPPKLALQKKHTIEVVVDRFKVRSDLATRLAESFETALELSGGTAIVADMDNL
KAEELIFSANFACPHCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEDRVVQNPTISLAGGAVKGWDRRNFYYYQM
LTSLAKHYDFDVEAPYESLPKKIQHIIMHGSGKEEIEFQYMNDRGDVVIRKHPFEGILNNMARRYKETESMSVREELAKN
ISNRPCIDCGGSRLRPEARNVYIGKTNLPIIAEKSIGETLEFFTALSLTGQKAQIAEKILKEIRERLQFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAIRAADHIIDI
GPGAGVHGGQVIAQGNADEIMLNPNSITGKFLSGADKIEIPKKRTALDKKKWLKLKGASGNNLKNVNLDIPVGLFTCVTG
VSGSGKSTLINDTLFPLAQNALNRAEKTDYAPYQSIEGLEHFDKVIDINQSPIGRTPRSNPATYTGLFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVLKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEEAREFF
DAIPMIARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLEVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIATGTPEQVAKVESSHTARFLKPILEKP

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=863602 WGK59_RS04055 WP_015701476.1 789496..792327(+) (uvrA) [Haemophilus influenzae strain AR2427]
ATGGAAAATATCGATATTCGCGGGGCTAGAACCCATAACCTGAAAAATATTAATTTAACTATTCCACGCAATAAACTTGT
GGTGATTACTGGGCTTTCAGGTTCGGGAAAATCCTCTTTAGCCTTTGATACACTTTATGCGGAAGGGCAACGCCGCTATG
TTGAATCTCTTTCGGCGTATGCACGTCAATTTTTGTCTTTAATGGAAAAGCCTGATGTGGATTCTATTGAGGGACTTTCC
CCTGCAATTTCCATTGAACAAAAATCTACCTCACACAATCCACGTTCTACAGTGGGAACAATTACGGAAATTTACGATTA
TTTACGTTTATTGTTTGCACGAGTAGGGGAGCCACGTTGTCCAGATCATAATGTTCCATTAACGGCACAAACAATTAGTC
AAATGGTGGATAAAGTATTAAGTTTGCCAGAAGACAGCAAGATGATGTTACTTGCGCCAGTTGTCAAAAATCGAAAAGGC
GAACATCTCAAGATTTTAGAAAATATTGCTGCGCAAGGTTATATTCGTGCGCGTATTGATGGCGAGATTTGCGATTTATC
TGATCCGCCAAAATTAGCCTTACAGAAAAAACATACTATTGAAGTAGTGGTTGATCGTTTTAAAGTGCGGTCAGATTTAG
CAACACGTTTAGCCGAATCTTTTGAAACCGCATTAGAGCTTTCAGGTGGCACTGCAATTGTGGCAGATATGGATAATCTG
AAAGCAGAAGAATTAATTTTTTCGGCAAATTTTGCTTGTCCGCATTGTGGTTATTCTGTGCCAGAATTAGAGCCTCGTTT
ATTTTCCTTTAACAATCCTGCAGGTGCTTGCCCAACTTGTGATGGCTTGGGTGTGCAGCAATATTTTGATGAAGATCGTG
TGGTGCAAAATCCAACTATTTCTCTTGCTGGCGGTGCAGTAAAAGGTTGGGATCGTCGTAATTTCTATTATTATCAAATG
CTTACATCATTGGCGAAACATTATGATTTTGATGTTGAAGCCCCTTATGAATCTTTGCCAAAGAAGATTCAACACATCAT
TATGCATGGCTCAGGTAAAGAGGAAATTGAATTCCAATATATGAATGATCGTGGCGATGTGGTTATTCGCAAGCATCCTT
TTGAAGGGATTTTGAATAATATGGCTCGCCGATATAAAGAAACGGAATCAATGTCGGTGCGTGAAGAATTAGCGAAAAAT
ATTAGCAATCGACCTTGTATAGATTGTGGCGGTTCTCGTTTGCGACCCGAAGCACGTAATGTGTATATTGGAAAAACCAA
TTTGCCGATAATTGCGGAAAAAAGCATTGGCGAAACCCTCGAATTTTTTACCGCACTTTCTTTAACAGGTCAAAAAGCAC
AAATTGCGGAAAAAATTCTTAAAGAAATCCGCGAGCGTTTGCAGTTTTTAGTGAATGTAGGTTTGAATTATCTTTCTCTT
TCTCGTTCAGCTGAAACTCTTTCAGGTGGGGAAGCGCAACGTATTCGCCTTGCGAGTCAAATTGGTGCGGGACTTGTTGG
CGTAATGTATGTATTAGATGAACCCTCTATTGGCTTGCACCAACGTGATAATGAACGCTTACTTAATACGTTAATTCATT
TGCGTAATCTTGGTAATACGGTAATTGTTGTGGAGCACGATGAAGACGCGATTCGTGCAGCTGACCATATTATTGATATT
GGGCCTGGTGCGGGCGTGCATGGCGGACAAGTTATTGCGCAAGGAAATGCCGATGAAATTATGCTCAATCCAAATTCCAT
CACGGGAAAATTTTTATCGGGCGCAGATAAAATCGAAATCCCGAAAAAACGCACCGCACTTGATAAGAAAAAATGGCTCA
AACTTAAAGGCGCATCAGGTAATAACTTAAAAAATGTGAATTTAGATATTCCCGTTGGTTTGTTTACTTGCGTAACTGGT
GTGTCTGGTTCAGGAAAATCCACACTTATTAATGATACTTTATTTCCACTTGCGCAAAATGCGTTAAATAGAGCGGAAAA
GACGGATTACGCACCTTATCAATCTATCGAGGGATTAGAACATTTCGATAAAGTTATTGATATTAACCAAAGCCCGATTG
GACGCACGCCACGTTCAAATCCAGCCACTTATACAGGCTTATTTACCCCGATTCGCGAGCTTTTTGCAGGTGTGCCAGAG
GCGCGTGCGCGCGGCTATAATCCTGGACGTTTTAGCTTTAACGTACGAGGTGGACGCTGTGAAGCCTGTCAGGGCGATGG
TGTACTCAAAGTTGAAATGCATTTTTTACCCGATGTTTATGTTCCTTGCGACCAATGTAAAGGTAAACGCTATAATCGCG
AAACCTTAGAAATTCGTTATAAAGGCAAAACGATTCATCAAGTTTTAGATATGACGGTGGAAGAAGCTCGCGAGTTTTTT
GATGCGATTCCAATGATTGCAAGAAAATTACAAACCTTGATAGATGTGGGATTATCCTATATTCGATTAGGTCAATCTTC
CACAACACTTTCAGGCGGCGAAGCCCAGCGCGTGAAACTAGCAACGGAACTTTCTAAACGTGATACGGGTAAAACTTTGT
ATATTCTAGATGAACCGACGACTGGTTTGCATTTTGCTGACATTAAGCAATTACTTGAAGTACTGCATCGATTACGCGAC
CAAGGAAATACTATCGTCGTCATTGAACACAATCTTGATGTGATTAAAACCGCAGACTGGATTGTCGATCTTGGCCCAGA
GGGAGGCAGTGGCGGCGGACAAATTATTGCGACGGGTACACCAGAGCAAGTTGCCAAAGTAGAAAGTTCCCACACCGCCC
GCTTCCTTAAACCGATTTTAGAAAAACCTTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.128

99.682

0.569
  uvrA Streptococcus pneumoniae TIGR4

57.128

99.682

0.569
  uvrA Streptococcus pneumoniae D39

57.128

99.682

0.569