Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q7635_RS04355 Genome accession   NZ_CP131670
Coordinates   882040..882498 (+) Length   152 a.a.
NCBI ID   WP_070869657.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2004N07-109     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 874420..899721 882040..882498 within 0


Gene organization within MGE regions


Location: 874420..899721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7635_RS04270 (Q7635_04265) - 874420..875469 (-) 1050 WP_001145725.1 tyrosine-type recombinase/integrase -
  Q7635_RS04275 (Q7635_04270) - 875531..876034 (-) 504 WP_000825941.1 hypothetical protein -
  Q7635_RS04280 (Q7635_04275) - 876052..876513 (-) 462 WP_138121323.1 toxin -
  Q7635_RS04285 (Q7635_04280) - 876526..876840 (-) 315 WP_000333630.1 helix-turn-helix transcriptional regulator -
  Q7635_RS04290 (Q7635_04285) - 876992..877228 (+) 237 WP_001121116.1 helix-turn-helix transcriptional regulator -
  Q7635_RS04295 (Q7635_04290) - 877242..877445 (+) 204 WP_000394020.1 hypothetical protein -
  Q7635_RS04300 (Q7635_04295) - 877442..877576 (-) 135 WP_260648415.1 hypothetical protein -
  Q7635_RS04305 (Q7635_04300) - 878019..878204 (+) 186 WP_000933363.1 helix-turn-helix transcriptional regulator -
  Q7635_RS04310 (Q7635_04305) - 878206..878958 (+) 753 WP_341931219.1 phage antirepressor KilAC domain-containing protein -
  Q7635_RS04315 (Q7635_04310) - 878974..879042 (+) 69 Protein_838 hypothetical protein -
  Q7635_RS04320 (Q7635_04315) - 879063..879728 (-) 666 WP_031764600.1 hypothetical protein -
  Q7635_RS04325 (Q7635_04320) - 879799..880020 (+) 222 WP_000977381.1 hypothetical protein -
  Q7635_RS04330 (Q7635_04325) - 880013..880174 (+) 162 WP_000066011.1 DUF1270 domain-containing protein -
  Q7635_RS04335 (Q7635_04330) - 880267..880596 (+) 330 WP_000829611.1 hypothetical protein -
  Q7635_RS04340 (Q7635_04335) - 880577..880837 (+) 261 WP_031903236.1 DUF1108 family protein -
  Q7635_RS04345 (Q7635_04340) - 880850..881386 (+) 537 WP_070869655.1 host-nuclease inhibitor Gam family protein -
  Q7635_RS04350 (Q7635_04345) - 881387..882040 (+) 654 WP_070869656.1 ERF family protein -
  Q7635_RS04355 (Q7635_04350) ssbA 882040..882498 (+) 459 WP_070869657.1 single-stranded DNA-binding protein Machinery gene
  Q7635_RS04360 (Q7635_04355) - 882511..883059 (+) 549 WP_070869658.1 NUMOD4 domain-containing protein -
  Q7635_RS04365 (Q7635_04360) - 883060..883734 (+) 675 WP_341931220.1 putative HNHc nuclease -
  Q7635_RS04370 (Q7635_04365) - 883840..884697 (-) 858 WP_000371250.1 DUF4393 domain-containing protein -
  Q7635_RS04375 (Q7635_04370) - 884762..885532 (+) 771 WP_000190224.1 conserved phage C-terminal domain-containing protein -
  Q7635_RS04380 (Q7635_04375) - 885542..886321 (+) 780 WP_103143576.1 ATP-binding protein -
  Q7635_RS04385 (Q7635_04380) - 886315..886476 (+) 162 WP_000237153.1 hypothetical protein -
  Q7635_RS04390 (Q7635_04385) - 886489..886710 (+) 222 WP_001123673.1 DUF3269 family protein -
  Q7635_RS04395 (Q7635_04390) - 886703..887125 (+) 423 WP_341931248.1 DUF1064 domain-containing protein -
  Q7635_RS04400 (Q7635_04395) - 887130..887315 (+) 186 WP_029625657.1 DUF3113 family protein -
  Q7635_RS04405 (Q7635_04400) - 887316..887687 (+) 372 WP_341931221.1 SA1788 family PVL leukocidin-associated protein -
  Q7635_RS04410 (Q7635_04405) - 887688..887936 (+) 249 WP_001126846.1 phi PVL orf 51-like protein -
  Q7635_RS04415 (Q7635_04410) - 887951..888199 (+) 249 WP_001065109.1 DUF1024 family protein -
  Q7635_RS04420 (Q7635_04415) - 888192..888722 (+) 531 WP_000185662.1 dUTPase -
  Q7635_RS04425 (Q7635_04420) - 888759..889004 (+) 246 WP_000120373.1 hypothetical protein -
  Q7635_RS04430 (Q7635_04425) - 889001..889189 (+) 189 WP_000195802.1 DUF1381 domain-containing protein -
  Q7635_RS04435 (Q7635_04430) - 889164..889364 (+) 201 WP_001125015.1 hypothetical protein -
  Q7635_RS04440 (Q7635_04435) - 889367..889540 (+) 174 WP_001806316.1 transcriptional activator RinB -
  Q7635_RS04445 (Q7635_04440) - 889541..889687 (+) 147 WP_000989997.1 hypothetical protein -
  Q7635_RS04450 (Q7635_04445) - 889702..890121 (+) 420 WP_000058633.1 transcriptional regulator -
  Q7635_RS04455 (Q7635_04450) - 890308..890802 (+) 495 WP_001004406.1 terminase small subunit -
  Q7635_RS04460 (Q7635_04455) - 890805..892100 (+) 1296 WP_117440126.1 PBSX family phage terminase large subunit -
  Q7635_RS04465 (Q7635_04460) - 892111..893646 (+) 1536 WP_117440127.1 phage portal protein -
  Q7635_RS04470 (Q7635_04465) - 893653..894648 (+) 996 WP_001133043.1 minor capsid protein -
  Q7635_RS04475 (Q7635_04470) - 894721..894891 (+) 171 WP_000072207.1 hypothetical protein -
  Q7635_RS04480 (Q7635_04475) - 895026..895640 (+) 615 WP_000354306.1 DUF4355 domain-containing protein -
  Q7635_RS04485 (Q7635_04480) - 895654..896628 (+) 975 WP_000438503.1 phage major capsid protein -
  Q7635_RS04490 (Q7635_04485) - 896650..896937 (+) 288 WP_001114086.1 hypothetical protein -
  Q7635_RS04495 (Q7635_04490) - 896946..897278 (+) 333 WP_000208960.1 phage head-tail connector protein -
  Q7635_RS04500 (Q7635_04495) - 897275..897577 (+) 303 WP_001268312.1 hypothetical protein -
  Q7635_RS04505 (Q7635_04500) - 897577..897924 (+) 348 WP_001017815.1 HK97-gp10 family putative phage morphogenesis protein -
  Q7635_RS04510 (Q7635_04505) - 897936..898319 (+) 384 WP_031900480.1 hypothetical protein -
  Q7635_RS04515 (Q7635_04510) - 898338..898919 (+) 582 WP_000002581.1 phage major tail protein, TP901-1 family -
  Q7635_RS04520 (Q7635_04515) - 898982..899347 (+) 366 WP_001100161.1 tail assembly chaperone -
  Q7635_RS04525 (Q7635_04520) - 899377..899721 (+) 345 WP_000105584.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17019.71 Da        Isoelectric Point: 8.4121

>NTDB_id=863602 Q7635_RS04355 WP_070869657.1 882040..882498(+) (ssbA) [Staphylococcus aureus strain 2004N07-109]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRPFTNAQGERETDFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQNNAYNAPQNRQQSNNPFANANGPIEISSDDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=863602 Q7635_RS04355 WP_070869657.1 882040..882498(+) (ssbA) [Staphylococcus aureus strain 2004N07-109]
ATGTTAAACAGAACAGTATTAGTAGGGCGATTAACAAAAGACCCAGAATTAAGAAGCACACCAAATGGCGTAAATGTAGG
GACGTTCACATTAGCAGTAAACAGACCATTTACGAATGCTCAAGGCGAGCGTGAAACAGACTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGATTACAAACACGT
AGCTACGATAACAAAGACGGGCAACGTGTATTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAGAATAATGCATATAACGCACCACAGAATAGACAGCAATCAAATA
ATCCATTTGCTAATGCTAATGGTCCTATAGAAATTAGTTCAGACGACCTCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.465

100

0.684
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.579
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

69.737

0.401
  ssb Neisseria meningitidis MC58

32.759

100

0.375
  ssb Neisseria gonorrhoeae MS11

32.759

100

0.375
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.375