Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q5H80_RS09870 Genome accession   NZ_CP130748
Coordinates   2262623..2262922 (-) Length   99 a.a.
NCBI ID   WP_304564625.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2257623..2267922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS09845 (Q5H80_09845) - 2257888..2259120 (+) 1233 WP_004736094.1 pyridoxal phosphate-dependent aminotransferase -
  Q5H80_RS09850 (Q5H80_09850) yfbR 2259465..2260049 (+) 585 WP_304564621.1 5'-deoxynucleotidase -
  Q5H80_RS09855 (Q5H80_09855) - 2260104..2261447 (+) 1344 WP_304564622.1 anti-phage deoxyguanosine triphosphatase -
  Q5H80_RS09860 (Q5H80_09860) - 2261475..2262074 (-) 600 WP_304564623.1 tRNA-uridine aminocarboxypropyltransferase -
  Q5H80_RS09865 (Q5H80_09865) rrtA 2262084..2262626 (+) 543 WP_304564624.1 rhombosortase -
  Q5H80_RS09870 (Q5H80_09870) comEA 2262623..2262922 (-) 300 WP_304564625.1 ComEA family DNA-binding protein Machinery gene
  Q5H80_RS09875 (Q5H80_09875) ppiD 2263144..2265009 (-) 1866 WP_304564626.1 peptidylprolyl isomerase -
  Q5H80_RS09880 (Q5H80_09880) - 2265231..2265503 (-) 273 WP_004736083.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10810.33 Da        Isoelectric Point: 4.4230

>NTDB_id=861295 Q5H80_RS09870 WP_304564625.1 2262623..2262922(-) (comEA) [Vibrio sp. SNU_ST1]
MRTIYSTLLLSFLMTLSSPVFADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGVFTTADDLV
SVKGIGEATVKKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=861295 Q5H80_RS09870 WP_304564625.1 2262623..2262922(-) (comEA) [Vibrio sp. SNU_ST1]
ATGCGCACGATATATTCAACATTACTTCTTTCATTTCTTATGACCCTCAGCTCACCAGTATTTGCTGATAGCCCAACTAA
AGCTGAGCTTTACGATGGCATTGAAATTACGGTAAACATTAATACAGCAACAGCAGAAGAACTCTCAGCGCTATTAGTTG
GGGTAGGGGATAAAAAAGCTCAAGAGATCGTCGATTACAGAGATCAAAACGGTGTGTTTACGACTGCTGATGATTTGGTG
AGTGTGAAAGGGATAGGTGAAGCCACGGTTAAAAAGAACCGCGAAAGAATTCAACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

53.922

100

0.556
  comEA Vibrio cholerae strain A1552

53.922

100

0.556
  comEA Vibrio parahaemolyticus RIMD 2210633

58.511

94.949

0.556
  comEA Vibrio campbellii strain DS40M4

54.839

93.939

0.515
  comE1/comEA Haemophilus influenzae Rd KW20

36.937

100

0.414
  comEA Acinetobacter baylyi ADP1

48.78

82.828

0.404