Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q3V89_RS08990 Genome accession   NZ_CP130526
Coordinates   1881226..1881696 (-) Length   156 a.a.
NCBI ID   WP_000934760.1    Uniprot ID   A0AAN2D761
Organism   Staphylococcus aureus strain SA19-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1858427..1900304 1881226..1881696 within 0


Gene organization within MGE regions


Location: 1858427..1900304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V89_RS08820 - 1860116..1861606 (-) 1491 WP_001154317.1 phage tail domain-containing protein -
  Q3V89_RS08825 - 1861606..1866255 (-) 4650 WP_001133523.1 phage tail tape measure protein -
  Q3V89_RS08830 - 1866311..1866433 (-) 123 WP_000571956.1 hypothetical protein -
  Q3V89_RS08835 - 1866493..1866939 (-) 447 WP_000442605.1 hypothetical protein -
  Q3V89_RS08840 - 1867005..1867958 (-) 954 WP_000570648.1 major tail protein -
  Q3V89_RS08845 - 1867959..1868339 (-) 381 WP_000608371.1 hypothetical protein -
  Q3V89_RS08850 - 1868336..1868713 (-) 378 WP_303262737.1 HK97-gp10 family putative phage morphogenesis protein -
  Q3V89_RS08855 - 1868713..1869048 (-) 336 WP_000975314.1 head-tail adaptor protein -
  Q3V89_RS08860 - 1869035..1869367 (-) 333 WP_001177483.1 head-tail connector protein -
  Q3V89_RS08865 - 1869376..1869534 (-) 159 WP_001252099.1 hypothetical protein -
  Q3V89_RS08870 - 1869570..1870817 (-) 1248 WP_000849950.1 phage major capsid protein -
  Q3V89_RS08875 - 1870905..1871489 (-) 585 WP_000032525.1 HK97 family phage prohead protease -
  Q3V89_RS08880 - 1871482..1872732 (-) 1251 WP_000511067.1 phage portal protein -
  Q3V89_RS08885 - 1872738..1872938 (-) 201 WP_000365299.1 hypothetical protein -
  Q3V89_RS08890 - 1872952..1874646 (-) 1695 WP_303262738.1 terminase large subunit -
  Q3V89_RS08895 - 1874649..1875116 (-) 468 WP_000919026.1 phage terminase small subunit P27 family -
  Q3V89_RS08900 - 1875244..1875588 (-) 345 WP_000817289.1 HNH endonuclease -
  Q3V89_RS08905 - 1875604..1876056 (-) 453 WP_000406191.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  Q3V89_RS08910 - 1876171..1876641 (-) 471 WP_000282755.1 hypothetical protein -
  Q3V89_RS08915 - 1876664..1876864 (-) 201 WP_001570807.1 DUF1514 family protein -
  Q3V89_RS08920 - 1876864..1876989 (-) 126 WP_031783376.1 transcriptional regulator -
  Q3V89_RS08925 - 1876982..1877185 (-) 204 WP_001072793.1 hypothetical protein -
  Q3V89_RS08930 - 1877186..1877377 (-) 192 Protein_1760 hypothetical protein -
  Q3V89_RS08935 - 1877374..1877580 (-) 207 WP_000195826.1 DUF1381 domain-containing protein -
  Q3V89_RS08940 - 1877617..1878150 (-) 534 WP_025920701.1 dUTP diphosphatase -
  Q3V89_RS08945 - 1878165..1878326 (-) 162 WP_000889683.1 hypothetical protein -
  Q3V89_RS08950 - 1878327..1878608 (-) 282 WP_000454994.1 hypothetical protein -
  Q3V89_RS08955 - 1878609..1878782 (-) 174 WP_000028424.1 hypothetical protein -
  Q3V89_RS08960 - 1878772..1879023 (-) 252 WP_025174939.1 DUF1024 family protein -
  Q3V89_RS08965 - 1879038..1879280 (-) 243 WP_000131381.1 phi PVL orf 51-like protein -
  Q3V89_RS08970 - 1879284..1879652 (-) 369 WP_000101275.1 SA1788 family PVL leukocidin-associated protein -
  Q3V89_RS08975 - 1879665..1880069 (-) 405 WP_000401978.1 RusA family crossover junction endodeoxyribonuclease -
  Q3V89_RS08980 - 1880078..1880296 (-) 219 WP_000338527.1 hypothetical protein -
  Q3V89_RS08985 - 1880303..1881196 (-) 894 WP_000148335.1 DnaD domain-containing protein -
  Q3V89_RS08990 ssbA 1881226..1881696 (-) 471 WP_000934760.1 single-stranded DNA-binding protein Machinery gene
  Q3V89_RS08995 - 1881697..1882314 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  Q3V89_RS09000 - 1882395..1883315 (-) 921 WP_000138475.1 recombinase RecT -
  Q3V89_RS09005 - 1883317..1885259 (-) 1943 Protein_1775 AAA family ATPase -
  Q3V89_RS09010 - 1885268..1885531 (-) 264 WP_001205732.1 hypothetical protein -
  Q3V89_RS09015 - 1885540..1885800 (-) 261 WP_000291488.1 DUF1108 family protein -
  Q3V89_RS09020 - 1885893..1886054 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  Q3V89_RS09025 - 1886051..1886371 (-) 321 WP_001120197.1 DUF771 domain-containing protein -
  Q3V89_RS09030 - 1886430..1887059 (+) 630 Protein_1780 hypothetical protein -
  Q3V89_RS09035 - 1887074..1887214 (-) 141 WP_000939496.1 hypothetical protein -
  Q3V89_RS09040 - 1887245..1887442 (-) 198 WP_001148861.1 hypothetical protein -
  Q3V89_RS09045 - 1887458..1888207 (-) 750 WP_001148337.1 phage antirepressor KilAC domain-containing protein -
  Q3V89_RS09050 - 1888264..1888803 (+) 540 WP_000351243.1 hypothetical protein -
  Q3V89_RS09055 - 1888827..1889087 (-) 261 WP_000435341.1 transcriptional regulator -
  Q3V89_RS09060 - 1889105..1889329 (-) 225 WP_000338185.1 DUF739 family protein -
  Q3V89_RS09065 - 1889488..1890258 (+) 771 WP_031783378.1 S24 family peptidase -
  Q3V89_RS09070 - 1890458..1890640 (+) 183 WP_000705240.1 hypothetical protein -
  Q3V89_RS09075 - 1890676..1890822 (+) 147 WP_001013104.1 hypothetical protein -
  Q3V89_RS09080 - 1890819..1891433 (-) 615 WP_000191459.1 hypothetical protein -
  Q3V89_RS09085 - 1891541..1892578 (+) 1038 WP_000857176.1 site-specific integrase -
  Q3V89_RS09090 - 1892741..1894099 (-) 1359 WP_031883303.1 FtsK/SpoIIIE domain-containing protein -
  Q3V89_RS09095 - 1894153..1896648 (-) 2496 WP_001049264.1 ATP-binding protein -
  Q3V89_RS09100 - 1896683..1897066 (-) 384 WP_000358144.1 TcpE family conjugal transfer membrane protein -
  Q3V89_RS09105 - 1897078..1897338 (-) 261 WP_000015644.1 TcpD family membrane protein -
  Q3V89_RS09110 - 1897343..1898398 (-) 1056 WP_000692005.1 conjugal transfer protein -
  Q3V89_RS09115 - 1898459..1899550 (-) 1092 WP_000172943.1 replication initiation factor domain-containing protein -
  Q3V89_RS09120 - 1899725..1900027 (-) 303 WP_000386891.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=859553 Q3V89_RS08990 WP_000934760.1 1881226..1881696(-) (ssbA) [Staphylococcus aureus strain SA19-SX]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=859553 Q3V89_RS08990 WP_000934760.1 1881226..1881696(-) (ssbA) [Staphylococcus aureus strain SA19-SX]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365