Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   STYK_RS10070 Genome accession   NZ_AP024523
Coordinates   2022248..2022910 (-) Length   220 a.a.
NCBI ID   WP_261804993.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2017248..2027910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS10045 (STYK_19300) - 2017398..2017664 (-) 267 WP_001278169.1 Veg family protein -
  STYK_RS10050 (STYK_19310) dnaB 2017666..2019018 (-) 1353 WP_004255325.1 replicative DNA helicase -
  STYK_RS10055 (STYK_19320) rplI 2019062..2019514 (-) 453 WP_004255324.1 50S ribosomal protein L9 -
  STYK_RS10060 (STYK_19330) - 2019511..2021484 (-) 1974 WP_261804992.1 DHH family phosphoesterase -
  STYK_RS10065 (STYK_19340) hpf 2021620..2022168 (-) 549 WP_000599100.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  STYK_RS10070 (STYK_19350) comFC/cflB 2022248..2022910 (-) 663 WP_261804993.1 ComF family protein Machinery gene
  STYK_RS10075 (STYK_19360) comFA/cflA 2022907..2024205 (-) 1299 WP_261804994.1 DEAD/DEAH box helicase Machinery gene
  STYK_RS10080 (STYK_19370) - 2024262..2024897 (+) 636 WP_261804995.1 YigZ family protein -
  STYK_RS10290 - 2024991..2025086 (+) 96 Protein_1941 PH domain-containing protein -
  STYK_RS10085 (STYK_19380) cysK 2025183..2026109 (+) 927 WP_261804996.1 cysteine synthase A -
  STYK_RS10090 (STYK_19390) tsf 2026232..2027272 (-) 1041 WP_084887694.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25360.31 Da        Isoelectric Point: 7.3707

>NTDB_id=85777 STYK_RS10070 WP_261804993.1 2022248..2022910(-) (comFC/cflB) [Streptococcus toyakuensis strain TP1632]
MKCLLCGQTMKAVLTFRSLLLLKNDDSCLCSDCDSTFERIGEENCPNCMKTGLSTKCQDCQFWCKEEVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASVLSEELKKYKEYQFVVIPLSPERLLERGFNQVEGLVEAAGFSFQDLLEKREERASSS
KNRSERLATELPFFIKRGVTIPKKVLLIDDIYTTGTTINRVKKLLEESGVEDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=85777 STYK_RS10070 WP_261804993.1 2022248..2022910(-) (comFC/cflB) [Streptococcus toyakuensis strain TP1632]
ATGAAGTGCTTATTATGTGGGCAGACTATGAAGGCTGTTTTAACTTTTAGGAGTCTCTTACTTCTGAAGAATGATGACTC
TTGTCTTTGTTCAGACTGTGACTCTACTTTTGAGAGGATTGGAGAAGAAAACTGCCCAAACTGTATGAAAACAGGTTTGT
CAACAAAGTGTCAAGATTGTCAATTTTGGTGTAAAGAAGAAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTTTTAAGAAAAGTTTTTGCTTCAGTTTTAAGTGA
GGAGTTAAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGAAAGATTGCTCGAGAGGGGATTTAACC
AGGTTGAAGGTTTAGTTGAAGCAGCAGGGTTCTCTTTTCAAGACTTACTAGAGAAGAGAGAAGAGCGGGCCAGTTCTTCC
AAAAATCGTTCAGAACGCTTGGCAACAGAACTTCCTTTCTTTATTAAAAGGGGAGTCACTATTCCTAAAAAAGTCCTACT
CATAGATGACATTTACACTACTGGAACAACTATAAATCGTGTGAAGAAACTGTTGGAAGAATCTGGTGTTGAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(180-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

93.636

100

0.936
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus pneumoniae TIGR4

90.455

100

0.905
  comFC/cflB Streptococcus pneumoniae Rx1

90

100

0.9
  comFC/cflB Streptococcus pneumoniae D39

90

100

0.9
  comFC/cflB Streptococcus pneumoniae R6

90

100

0.9
  comFC Bacillus subtilis subsp. subtilis str. 168

35.526

100

0.368

Multiple sequence alignment