Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   STYK_RS06515 Genome accession   NZ_AP024523
Coordinates   1260657..1261505 (-) Length   282 a.a.
NCBI ID   WP_000705318.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1255657..1266505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS06485 (STYK_12270) - 1256258..1256914 (-) 657 WP_070527767.1 MmcQ/YjbR family DNA-binding protein -
  STYK_RS06490 (STYK_12280) - 1256958..1257590 (-) 633 WP_020902796.1 copper homeostasis protein CutC -
  STYK_RS06495 (STYK_12290) - 1257683..1258042 (-) 360 WP_004258004.1 YbaN family protein -
  STYK_RS06500 - 1258077..1258202 (-) 126 WP_004258001.1 hypothetical protein -
  STYK_RS06505 (STYK_12300) topA 1258301..1260388 (-) 2088 WP_261804740.1 type I DNA topoisomerase -
  STYK_RS06510 - 1260514..1260660 (+) 147 WP_000693517.1 hypothetical protein -
  STYK_RS06515 (STYK_12310) dprA/cilB/dalA 1260657..1261505 (-) 849 WP_000705318.1 DNA-processing protein DprA Machinery gene
  STYK_RS06520 (STYK_12320) - 1261593..1262282 (-) 690 WP_000643976.1 sugar phosphate nucleotidyltransferase -
  STYK_RS06525 (STYK_12330) - 1262294..1263172 (-) 879 WP_000791849.1 DMT family transporter -
  STYK_RS06530 (STYK_12340) licA 1263162..1264031 (-) 870 WP_261804741.1 choline kinase LicA -
  STYK_RS06535 (STYK_12350) - 1264048..1265070 (-) 1023 WP_237446814.1 ribitol-5-phosphate dehydrogenase -
  STYK_RS06540 (STYK_12360) - 1265075..1265782 (-) 708 WP_000638495.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31047.67 Da        Isoelectric Point: 5.0589

>NTDB_id=85750 STYK_RS06515 WP_000705318.1 1260657..1261505(-) (dprA/cilB/dalA) [Streptococcus toyakuensis strain TP1632]
MKITNYEIYKLKKSGLTNQQVLAVLEYGENVDQELLLGDIAEISGCRNPAVFMERYFQIDDAHLEKEFQKFPSFSILDDC
YPWDLSEIYDAPVLLFYKGNLDLLKFPKVAVVGSRACSKQGAKSVEKVIQGLENELVIVSGLAKGIDTAAHMAALQNGGK
TIAVIGTGLDVFYPKANKRLQDYIGNDHLVLSEYGPGEQPLKFHFPARNRIIAGLCRGVIVAEAKMRSGSLITCERAMEE
GRDVFAIPGSILDGLSDGCHHLIQEGAKLVTSGQDVLAEFEF

Nucleotide


Download         Length: 849 bp        

>NTDB_id=85750 STYK_RS06515 WP_000705318.1 1260657..1261505(-) (dprA/cilB/dalA) [Streptococcus toyakuensis strain TP1632]
ATGAAAATCACAAACTATGAAATCTATAAATTGAAAAAATCAGGTTTGACCAATCAACAGGTTTTGGCAGTTCTAGAATA
CGGTGAAAATGTCGATCAAGAACTTTTGTTGGGTGATATTGCAGAAATATCAGGTTGCAGAAATCCAGCTGTTTTTATGG
AACGTTACTTTCAGATAGACGATGCGCATTTGGAGAAGGAGTTTCAAAAATTTCCATCTTTCTCTATTTTAGATGACTGT
TACCCTTGGGATTTGAGTGAAATATATGATGCGCCTGTACTTTTATTTTACAAGGGAAATCTTGACCTCTTGAAATTCCC
GAAGGTAGCAGTCGTGGGCAGTCGTGCGTGTAGCAAACAGGGAGCTAAGTCAGTTGAAAAAGTCATTCAGGGCTTGGAAA
ATGAACTGGTTATCGTCAGTGGCTTAGCCAAGGGCATTGACACAGCAGCTCATATGGCAGCTCTTCAGAATGGCGGAAAA
ACCATTGCAGTGATTGGAACAGGACTGGATGTGTTTTATCCTAAAGCCAATAAACGCTTGCAAGACTACATCGGCAATGA
CCATCTGGTTCTAAGTGAATACGGACCTGGTGAACAACCTCTGAAATTTCATTTTCCTGCCCGTAATCGTATCATTGCTG
GACTTTGTCGTGGTGTGATTGTAGCAGAGGCTAAGATGCGTTCAGGTAGTCTCATTACCTGTGAGAGAGCAATGGAAGAA
GGGCGCGATGTCTTTGCTATTCCTGGTAGCATTTTAGATGGACTATCAGACGGTTGCCATCATTTGATTCAAGAAGGGGC
AAAATTGGTCACCAGCGGGCAGGATGTTCTTGCGGAATTTGAATTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(3-64)

DNA recombination-mediator protein A (DNA_processg_A)

(75-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

100

100

1
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

98.582

100

0.986
  dprA/cilB/dalA Streptococcus pneumoniae D39

98.582

100

0.986
  dprA/cilB/dalA Streptococcus pneumoniae R6

98.582

100

0.986
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

98.582

100

0.986
  dprA/cilB/dalA Streptococcus mitis SK321

97.163

100

0.972
  dprA Streptococcus mutans UA159

62.857

99.291

0.624
  dprA Lactococcus lactis subsp. cremoris KW2

55.714

99.291

0.553
  dprA Haemophilus influenzae Rd KW20

38.202

94.681

0.362

Multiple sequence alignment