Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLWG2_RS05930 Genome accession   NZ_CP129660
Coordinates   1129380..1130030 (-) Length   216 a.a.
NCBI ID   WP_064305105.1    Uniprot ID   -
Organism   Lactococcus cremoris strain Wg2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1124380..1135030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLWG2_RS05900 (LLWG2_05930) - 1124571..1126103 (+) 1533 WP_015082368.1 Nramp family divalent metal transporter -
  LLWG2_RS05905 (LLWG2_05935) - 1126177..1127145 (+) 969 WP_021165232.1 PhoH family protein -
  LLWG2_RS05910 (LLWG2_05940) - 1127215..1127709 (+) 495 WP_011676092.1 NUDIX hydrolase -
  LLWG2_RS05915 (LLWG2_05945) ybeY 1127800..1128288 (+) 489 WP_021165233.1 rRNA maturation RNase YbeY -
  LLWG2_RS05920 (LLWG2_05950) - 1128272..1128727 (+) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLWG2_RS05925 (LLWG2_05955) - 1128744..1129322 (+) 579 WP_011676095.1 nucleotidyltransferase family protein -
  LLWG2_RS05930 (LLWG2_05960) comFC 1129380..1130030 (-) 651 WP_064305105.1 ComF family protein Machinery gene
  LLWG2_RS05935 - 1130030..1131324 (-) 1295 Protein_1144 helicase-related protein -
  LLWG2_RS05940 (LLWG2_05975) - 1131381..1132016 (+) 636 WP_011676097.1 YigZ family protein -
  LLWG2_RS05945 (LLWG2_05980) istA 1132234..1133457 (+) 1224 WP_064305106.1 IS21-like element IS712 family transposase -
  LLWG2_RS05950 (LLWG2_05985) istB 1133469..1134227 (+) 759 WP_015081777.1 IS21-like element IS712 family helper ATPase IstB -
  LLWG2_RS05955 (LLWG2_05990) - 1134310..1134726 (+) 417 WP_021165237.1 VanZ family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25316.58 Da        Isoelectric Point: 9.7533

>NTDB_id=854808 LLWG2_RS05930 WP_064305105.1 1129380..1130030(-) (comFC) [Lactococcus cremoris strain Wg2]
MQTCLLCSRIIKQTLTFSEFFLLKNNRNLICNKCQSLFKKIPNERCPRCSKSNSKGICADCLKWEEKGIIVNHQSIFIYN
QAMKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTDFLKDRAYLDLLEKEDTVRQSSLNRE
GRLSTSNPFKLKEGEKIPQKIILIDDIYTTVTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=854808 LLWG2_RS05930 WP_064305105.1 1129380..1130030(-) (comFC) [Lactococcus cremoris strain Wg2]
ATGCAAACTTGTCTGCTTTGTTCCAGAATTATCAAACAAACACTCACTTTTAGTGAATTCTTTTTACTAAAGAATAACAG
AAATTTAATATGCAATAAATGCCAATCACTGTTTAAAAAAATTCCTAACGAACGTTGTCCTCGTTGCTCTAAATCTAACT
CTAAAGGTATATGTGCTGACTGTCTCAAGTGGGAAGAAAAAGGAATCATTGTTAATCATCAGTCAATTTTTATTTATAAC
CAAGCAATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAA
AAATTTGTCCAAAAAAATTCCTCTGGTTCCCATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGTTTTAACCAAGTAA
CAGATTTTCTAAAAGATAGAGCTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGACAATCAAGTCTTAATCGCGAG
GGACGTCTATCAACTAGCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCCAAAAAATCATTTTGATTGATGATAT
TTATACAACTGTAACTACTTTTTATCATGCAATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTTTCAC
TCTGCCGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

97.015

62.037

0.602
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

100

0.495
  comFC/cflB Streptococcus pneumoniae Rx1

46.789

100

0.472
  comFC/cflB Streptococcus pneumoniae D39

46.789

100

0.472
  comFC/cflB Streptococcus pneumoniae R6

46.789

100

0.472
  comFC/cflB Streptococcus pneumoniae TIGR4

46.789

100

0.472
  comFC/cflB Streptococcus mitis SK321

46.789

100

0.472
  comFC Bacillus subtilis subsp. subtilis str. 168

34.361

100

0.361