Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | QY867_RS04240 | Genome accession | NZ_CP129529 |
| Coordinates | 846283..846582 (+) | Length | 99 a.a. |
| NCBI ID | WP_076632062.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain A1291 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 841283..851582
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QY867_RS04215 (QY867_04210) | - | 842487..842861 (-) | 375 | WP_011375004.1 | hypothetical protein | - |
| QY867_RS04220 (QY867_04215) | - | 842958..843458 (+) | 501 | WP_076632058.1 | VanZ family protein | - |
| QY867_RS04225 (QY867_04220) | - | 843549..844280 (+) | 732 | WP_341844041.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| QY867_RS04230 (QY867_04225) | comGA | 844396..845286 (+) | 891 | WP_100970233.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| QY867_RS04235 (QY867_04230) | comGB | 845279..846286 (+) | 1008 | WP_076632061.1 | type II secretion system F family protein | Machinery gene |
| QY867_RS04240 (QY867_04235) | comGC | 846283..846582 (+) | 300 | WP_076632062.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| QY867_RS04245 (QY867_04240) | comGD | 846554..847006 (+) | 453 | WP_076632063.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| QY867_RS04250 (QY867_04245) | comGE | 846993..847298 (+) | 306 | WP_025016385.1 | hypothetical protein | Machinery gene |
| QY867_RS04255 (QY867_04250) | comGF | 847273..848085 (+) | 813 | WP_337457506.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| QY867_RS04260 (QY867_04255) | - | 848209..849219 (+) | 1011 | WP_011374994.1 | class I SAM-dependent methyltransferase | - |
| QY867_RS04265 (QY867_04260) | - | 849241..850437 (+) | 1197 | WP_011374993.1 | acetate kinase | - |
| QY867_RS04270 (QY867_04265) | - | 850492..850950 (+) | 459 | WP_011374992.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10979.95 Da Isoelectric Point: 10.1321
>NTDB_id=854061 QY867_RS04240 WP_076632062.1 846283..846582(+) (comGC) [Latilactobacillus sakei strain A1291]
MKKKRNAFTLIEMVVVLAIIALLILLVAPNLGAQKQRAEKKTDQALVTTLQTQVELASDEIGHQIKSLDELTDKYISKDQ
LKHAKEKGITIEGGTVKQK
MKKKRNAFTLIEMVVVLAIIALLILLVAPNLGAQKQRAEKKTDQALVTTLQTQVELASDEIGHQIKSLDELTDKYISKDQ
LKHAKEKGITIEGGTVKQK
Nucleotide
Download Length: 300 bp
>NTDB_id=854061 QY867_RS04240 WP_076632062.1 846283..846582(+) (comGC) [Latilactobacillus sakei strain A1291]
ATGAAGAAAAAAAGAAATGCTTTTACACTAATCGAAATGGTAGTTGTTCTTGCCATTATTGCGTTATTAATCTTATTAGT
TGCACCAAACCTAGGTGCTCAAAAACAGCGCGCGGAGAAGAAAACGGATCAAGCTTTGGTGACGACTTTGCAAACGCAAG
TTGAATTAGCTAGCGACGAGATTGGTCATCAAATTAAGAGTCTAGACGAATTAACGGATAAGTATATTTCAAAAGACCAA
TTAAAGCACGCAAAGGAGAAGGGGATTACAATTGAAGGCGGCACGGTTAAGCAAAAATGA
ATGAAGAAAAAAAGAAATGCTTTTACACTAATCGAAATGGTAGTTGTTCTTGCCATTATTGCGTTATTAATCTTATTAGT
TGCACCAAACCTAGGTGCTCAAAAACAGCGCGCGGAGAAGAAAACGGATCAAGCTTTGGTGACGACTTTGCAAACGCAAG
TTGAATTAGCTAGCGACGAGATTGGTCATCAAATTAAGAGTCTAGACGAATTAACGGATAAGTATATTTCAAAAGACCAA
TTAAAGCACGCAAAGGAGAAGGGGATTACAATTGAAGGCGGCACGGTTAAGCAAAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Latilactobacillus sakei subsp. sakei 23K |
98.99 |
100 |
0.99 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.186 |
86.869 |
0.384 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.186 |
86.869 |
0.384 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.186 |
86.869 |
0.384 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.186 |
86.869 |
0.384 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
43.023 |
86.869 |
0.374 |