Detailed information NTG0854064

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: QY867_RS04255
• Genome accession: NZ_CP129529
• Coordinates: 847273..848085 (+)
• Length: 270 a.a.
• NCBI ID: WP_337457506.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain A1291
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 842273..853085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY867_RS04215 (QY867_04210)	-	842487..842861 (-)	375	WP_011375004.1	hypothetical protein	-
QY867_RS04220 (QY867_04215)	-	842958..843458 (+)	501	WP_076632058.1	VanZ family protein	-
QY867_RS04225 (QY867_04220)	-	843549..844280 (+)	732	WP_341844041.1	YebC/PmpR family DNA-binding transcriptional regulator	-
QY867_RS04230 (QY867_04225)	comGA	844396..845286 (+)	891	WP_100970233.1	competence type IV pilus ATPase ComGA	Machinery gene
QY867_RS04235 (QY867_04230)	comGB	845279..846286 (+)	1008	WP_076632061.1	type II secretion system F family protein	Machinery gene
QY867_RS04240 (QY867_04235)	comGC	846283..846582 (+)	300	WP_076632062.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
QY867_RS04245 (QY867_04240)	comGD	846554..847006 (+)	453	WP_076632063.1	competence type IV pilus minor pilin ComGD	Machinery gene
QY867_RS04250 (QY867_04245)	comGE	846993..847298 (+)	306	WP_025016385.1	hypothetical protein	Machinery gene
QY867_RS04255 (QY867_04250)	comGF	847273..848085 (+)	813	WP_337457506.1	competence type IV pilus minor pilin ComGF	Machinery gene
QY867_RS04260 (QY867_04255)	-	848209..849219 (+)	1011	WP_011374994.1	class I SAM-dependent methyltransferase	-
QY867_RS04265 (QY867_04260)	-	849241..850437 (+)	1197	WP_011374993.1	acetate kinase	-
QY867_RS04270 (QY867_04265)	-	850492..850950 (+)	459	WP_011374992.1	hypothetical protein	-
QY867_RS04280 (QY867_04275)	-	851512..852657 (-)	1146	WP_341844042.1	tyrosine-type recombinase/integrase	-

Sequence

Protein

• Length: 270 a.a.
• Molecular weight: 31149.09 Da
• Isoelectric Point: 10.1526

>NTDB_id=854064 QY867_RS04255 WP_337457506.1 847273..848085(+) (comGF) [Latilactobacillus sakei strain A1291]
MRLIGRPIKHSAFTLIEMVISMAILILTSQLLVATVGVLQKAIKVTQQQQNTINWHISTIQLDQFLADAYFTHHQDQDGS
KITFRKPDTNQSGEEAETVYYLKRMKNEMVVVSQLDGYMPLLGKLKQLQLDYQRPFVQIDTTFTDQSRYQHEVFLEEQDE
QAKKRRLKPIKHSAVALLNAILILTLISVVLVGVTHSYQQQQQSYRYLLNHYQAKTLYELTLASQSKTDLKGIKATTGES
KILRKQHQIKVTLKNGYQKQFEIKNITGKK

Nucleotide

• Length: 813 bp

>NTDB_id=854064 QY867_RS04255 WP_337457506.1 847273..848085(+) (comGF) [Latilactobacillus sakei strain A1291]
TTGCGATTAATTGGACGACCGATTAAGCATTCAGCGTTCACGCTAATTGAAATGGTGATTTCAATGGCGATTCTAATCCT
GACGAGTCAGTTACTGGTGGCAACGGTGGGTGTTTTACAAAAGGCAATTAAAGTGACACAACAACAGCAAAATACAATCA
ATTGGCATATCAGTACGATTCAGTTAGATCAGTTTTTAGCCGATGCGTATTTTACACATCATCAGGATCAAGATGGCTCC
AAAATCACTTTTCGAAAACCAGACACTAATCAGTCAGGGGAGGAAGCAGAGACTGTTTACTATTTAAAAAGGATGAAAAA
TGAAATGGTTGTTGTCAGTCAATTAGATGGGTATATGCCATTATTAGGCAAACTCAAGCAACTTCAACTTGACTATCAGC
GACCGTTTGTTCAAATCGATACGACTTTTACGGATCAGAGTCGCTACCAACACGAAGTTTTCTTGGAGGAACAAGATGAA
CAGGCTAAAAAAAGACGATTAAAACCGATTAAACATTCGGCGGTTGCATTACTTAACGCGATATTAATACTGACATTAAT
CAGCGTCGTATTAGTAGGTGTGACACATAGTTATCAACAGCAACAACAGAGTTATCGGTATTTGCTGAATCATTATCAAG
CTAAAACACTTTATGAGCTGACCTTGGCTAGTCAATCCAAGACTGATTTAAAGGGGATTAAAGCCACAACAGGTGAAAGC
AAAATTCTAAGGAAACAGCATCAAATCAAGGTGACGCTTAAGAATGGCTATCAGAAACAGTTTGAAATAAAAAATATAAC
AGGTAAAAAATAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (40-149)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Latilactobacillus sakei subsp. sakei 23K	98.214	62.222	0.611