Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   QYM01_RS07680 Genome accession   NZ_CP129527
Coordinates   1622857..1625013 (+) Length   718 a.a.
NCBI ID   WP_301899519.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1617857..1630013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS07635 (QYM01_07635) - 1617978..1618130 (+) 153 Protein_1485 helix-turn-helix transcriptional regulator -
  QYM01_RS07640 (QYM01_07640) - 1618282..1618863 (-) 582 WP_301899513.1 GNAT family N-acetyltransferase -
  QYM01_RS07645 (QYM01_07645) - 1619117..1619530 (-) 414 WP_301899514.1 bacteriocin immunity protein -
  QYM01_RS07650 (QYM01_07650) - 1620192..1620395 (-) 204 WP_012516109.1 Blp family class II bacteriocin -
  QYM01_RS07655 (QYM01_07655) - 1620412..1620666 (-) 255 WP_012516110.1 Blp family class II bacteriocin -
  QYM01_RS07660 (QYM01_07660) - 1620817..1621113 (-) 297 WP_301899515.1 bacteriocin immunity protein -
  QYM01_RS07665 (QYM01_07665) - 1621113..1621331 (-) 219 WP_021321057.1 leucocin A/sakacin P family class II bacteriocin -
  QYM01_RS07670 (QYM01_07670) - 1622047..1622343 (-) 297 WP_111692935.1 bacteriocin immunity protein -
  QYM01_RS07675 (QYM01_07675) - 1622350..1622598 (-) 249 WP_111692693.1 garvicin Q family class II bacteriocin -
  QYM01_RS07680 (QYM01_07680) comA/nlmT 1622857..1625013 (+) 2157 WP_301899519.1 peptide cleavage/export ABC transporter Regulator
  QYM01_RS07685 (QYM01_07685) - 1625024..1626382 (+) 1359 WP_301899520.1 bacteriocin secretion accessory protein -
  QYM01_RS07690 (QYM01_07690) - 1626482..1626616 (+) 135 WP_012516117.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  QYM01_RS07695 (QYM01_07695) - 1626735..1627565 (-) 831 WP_228269594.1 GHKL domain-containing protein -
  QYM01_RS07700 (QYM01_07700) comE/blpR 1628069..1628818 (-) 750 WP_042671079.1 LytTR family DNA-binding domain-containing protein Regulator
  QYM01_RS07705 (QYM01_07705) - 1629464..1629667 (-) 204 WP_012516120.1 TmhB bacteriocin enhancer peptide -
  QYM01_RS07710 (QYM01_07710) - 1629684..1629941 (-) 258 WP_043026412.1 Blp family class II bacteriocin -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 80622.77 Da        Isoelectric Point: 7.7992

>NTDB_id=854004 QYM01_RS07680 WP_301899519.1 1622857..1625013(+) (comA/nlmT) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MTLFYRRTFVPQIDARDCGVAALASIARYYGSDYSLAHLRELAKTNKEGTTALGIVMAAKEIGFETRPIQADMTLFDMAD
VPYPLIVHVNKEGKLQHYYVVYKSKKDYLIIGDPDPMVKVTKMSKERFASEWTGVTICLAPKPNYKPHKDQKNGLLGFFP
LIFKQRALIFYIVLASVLVTVINIAGSYYLQGILDEYIPNQLKSTLGIVSIGLIITYILQQLMSFSRDYLLTVLSQRLTI
DVILSYIRHIFELPMSFFATRRTGEVTSRFTDANSIIDALASTILSLFLDLSILAIVGSVLLVQNSRLFLLSLISIPVYT
IIICAFIKPFEQMNHDVMQSNAMLSSAIIEDINGIETIKSLTSEENRYQKIDSDFVDYLDKSFRLSKYTILQATLKQGAQ
LILNIIILWFGAQLVINGRISIGQLITFNTLLAYFTTPLENIINLQTKLQAAKVANNRLNEVYLVESEFKASQALYDLSL
LHGDIQFEAVSYRYGFGKDTLSDITLTIKQGAKVTLVGVSGSGKTTLAKMLVNFFEPYKGRITINQNDLKTIDKKNLRQY
INYLPQQAYVFNGSILENLTLGAKQGISQEDILKACEIADIRHDIEQMPMGYQTELSDGAGLSGGQKQRIALARALLTQA
PILVLDEATSGLDILTEKKIIDRLMNMTDKTIIFVAHRLSIAERTDQVVVLNQGQIIETGSHQELMKQGGFYYHLFSE

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=854004 QYM01_RS07680 WP_301899519.1 1622857..1625013(+) (comA/nlmT) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGACACTTTTTTATAGAAGAACCTTTGTACCACAAATAGATGCCAGAGATTGTGGCGTAGCTGCTCTAGCTTCGATCGC
AAGGTATTATGGTTCAGATTATTCATTAGCTCATTTGAGAGAATTAGCAAAGACCAATAAGGAAGGGACAACAGCCCTCG
GTATTGTCATGGCTGCTAAGGAAATAGGGTTTGAAACCAGACCCATTCAAGCGGATATGACCCTCTTTGACATGGCAGAT
GTGCCCTATCCATTGATCGTCCATGTCAATAAAGAAGGAAAGCTACAGCACTACTATGTGGTCTACAAATCTAAAAAAGA
CTATCTTATCATTGGTGATCCCGATCCAATGGTCAAGGTCACAAAAATGTCCAAGGAACGCTTTGCTTCCGAATGGACAG
GTGTCACCATATGTCTTGCTCCTAAGCCAAATTATAAACCACATAAAGACCAAAAAAATGGACTATTAGGCTTCTTTCCA
CTTATTTTTAAACAGCGAGCCCTTATTTTTTATATCGTGTTAGCTTCTGTCTTGGTAACGGTCATTAATATTGCTGGTTC
ATACTATCTCCAAGGGATTTTAGACGAGTATATTCCAAATCAACTGAAATCTACCTTAGGGATTGTATCAATTGGTCTCA
TCATTACCTATATACTCCAGCAGCTAATGAGCTTTTCTAGAGATTATCTTTTAACTGTCCTTAGCCAACGTCTTACGATT
GATGTGATCCTGTCCTATATCCGCCATATTTTCGAATTGCCGATGTCCTTTTTTGCAACACGTCGAACAGGTGAGGTAAC
CTCGCGCTTTACAGATGCTAACTCTATCATTGACGCACTCGCTTCAACCATTTTATCTCTCTTTCTAGACCTCTCTATAT
TAGCTATTGTCGGAAGTGTTCTTTTGGTGCAAAATAGCAGGCTTTTTCTGCTGTCCCTGATTTCTATTCCAGTATATACC
ATTATCATATGTGCCTTTATAAAGCCGTTTGAACAAATGAATCATGATGTGATGCAAAGCAATGCCATGCTAAGCTCTGC
TATTATCGAAGATATCAACGGGATCGAAACCATAAAATCACTAACCAGTGAAGAAAACCGTTACCAAAAAATTGACAGCG
ACTTTGTGGATTACCTCGATAAGTCCTTTAGGCTTAGTAAATATACCATCTTACAAGCCACACTTAAGCAAGGAGCGCAG
CTAATTCTGAATATCATCATTCTTTGGTTTGGGGCTCAACTGGTTATTAATGGTAGGATTTCAATCGGGCAGTTAATTAC
CTTTAACACACTTCTTGCCTATTTTACAACCCCTTTAGAAAATATCATTAATCTTCAAACCAAGCTCCAAGCAGCTAAGG
TTGCCAACAATCGTCTCAATGAGGTCTATCTTGTAGAGTCCGAATTTAAAGCCTCGCAAGCCTTATACGATTTATCGCTC
TTACATGGTGACATTCAGTTTGAAGCTGTTTCCTACAGGTATGGCTTTGGCAAGGATACATTATCAGATATTACATTAAC
CATTAAGCAGGGAGCAAAAGTAACCCTTGTTGGTGTCAGCGGCTCAGGAAAAACAACCCTAGCCAAGATGCTCGTCAATT
TCTTTGAGCCTTATAAGGGACGTATAACCATCAACCAAAACGATCTCAAGACCATTGATAAAAAGAATCTTCGACAATAC
ATCAACTACCTTCCACAACAAGCCTATGTGTTTAATGGATCTATCTTAGAAAATCTAACCTTGGGAGCCAAGCAGGGCAT
CAGCCAGGAAGACATTCTTAAAGCCTGTGAGATTGCTGACATTCGTCACGACATCGAGCAAATGCCAATGGGATACCAAA
CCGAGCTCTCTGATGGGGCTGGCTTATCTGGCGGACAAAAACAGAGAATTGCACTTGCTAGAGCATTACTAACCCAAGCT
CCTATACTAGTTCTTGATGAAGCAACCAGCGGACTTGACATACTGACAGAAAAGAAAATCATTGACCGTCTCATGAACAT
GACAGACAAAACGATTATTTTCGTTGCCCACCGGCTTAGTATCGCAGAGCGCACTGATCAGGTTGTTGTTCTTAATCAAG
GGCAAATCATTGAGACAGGCAGCCATCAGGAATTAATGAAACAAGGTGGATTTTATTACCACCTATTTAGTGAATAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(8-143)

ABC transporter transmembrane region (ABC_membrane)

(169-439)

ABC transporter (ABC_tran)

(501-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

71.13

99.861

0.71
  comA Streptococcus mitis SK321

67.742

99.304

0.673
  comA Streptococcus mitis NCTC 12261

67.461

99.304

0.67
  comA Streptococcus pneumoniae Rx1

67.041

99.304

0.666
  comA Streptococcus pneumoniae D39

67.041

99.304

0.666
  comA Streptococcus pneumoniae R6

67.041

99.304

0.666
  comA Streptococcus pneumoniae TIGR4

66.76

99.304

0.663
  comA Streptococcus gordonii str. Challis substr. CH1

65.077

99.304

0.646