Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   QYM01_RS07700 Genome accession   NZ_CP129527
Coordinates   1628069..1628818 (-) Length   249 a.a.
NCBI ID   WP_042671079.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623069..1633818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS07685 (QYM01_07685) - 1625024..1626382 (+) 1359 WP_301899520.1 bacteriocin secretion accessory protein -
  QYM01_RS07690 (QYM01_07690) - 1626482..1626616 (+) 135 WP_012516117.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  QYM01_RS07695 (QYM01_07695) - 1626735..1627565 (-) 831 WP_228269594.1 GHKL domain-containing protein -
  QYM01_RS07700 (QYM01_07700) comE/blpR 1628069..1628818 (-) 750 WP_042671079.1 LytTR family DNA-binding domain-containing protein Regulator
  QYM01_RS07705 (QYM01_07705) - 1629464..1629667 (-) 204 WP_012516120.1 TmhB bacteriocin enhancer peptide -
  QYM01_RS07710 (QYM01_07710) - 1629684..1629941 (-) 258 WP_043026412.1 Blp family class II bacteriocin -
  QYM01_RS07715 (QYM01_07715) rlmD 1630262..1631629 (-) 1368 WP_301899522.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  QYM01_RS07720 (QYM01_07720) - 1631626..1632594 (-) 969 WP_301899523.1 DNA-binding protein -
  QYM01_RS07725 (QYM01_07725) recX 1632658..1633434 (+) 777 WP_301899524.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 29227.69 Da        Isoelectric Point: 8.4602

>NTDB_id=854005 QYM01_RS07700 WP_042671079.1 1628069..1628818(-) (comE/blpR) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MRVVILEDDMIQQRYLEKLIKELEVKHQLLFQGLDCFGRPHQLLSAIKKNCGQQLFFLDIEIKNEDKKGLEVARQIRQIN
PDAMIVFVTTHSEFMPLAFQYQVSALDYIDKELPHTEFVQRVETALLYAVRQNSETIAESAFYFTSRYAQVQVPFNDILY
IETSSRAHRVNLYTKKERMQFTGTLTDILKQESRFLQCHRSFLINPRNVVRVDKIERVVYFRNGSSCLIARSKMNSVLTT
IENLHRGDN

Nucleotide


Download         Length: 750 bp        

>NTDB_id=854005 QYM01_RS07700 WP_042671079.1 1628069..1628818(-) (comE/blpR) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
GTGAGAGTAGTTATTTTAGAAGATGATATGATTCAGCAGAGATATTTAGAAAAGCTCATTAAAGAGCTTGAGGTTAAGCA
CCAGCTATTATTTCAAGGACTTGACTGTTTTGGAAGGCCTCATCAGCTATTAAGTGCTATCAAGAAGAACTGTGGTCAGC
AGCTATTCTTTTTAGATATTGAGATAAAAAATGAGGACAAAAAAGGGCTTGAGGTTGCTAGGCAAATTCGTCAGATAAAT
CCAGATGCGATGATTGTTTTTGTAACGACTCACTCGGAATTTATGCCCTTGGCTTTTCAGTATCAGGTATCTGCTTTGGA
CTATATCGATAAAGAGCTGCCTCACACTGAGTTTGTTCAACGGGTAGAGACTGCTTTATTATATGCTGTGCGGCAAAATA
GTGAAACGATAGCGGAAAGTGCTTTTTATTTTACATCTCGTTATGCTCAGGTACAGGTGCCTTTTAATGATATCCTGTAT
ATTGAGACATCGTCACGAGCGCATCGTGTCAATTTGTATACAAAAAAGGAGAGAATGCAATTTACAGGGACTTTGACGGA
TATTTTGAAGCAAGAGTCTCGTTTTTTGCAATGTCATCGTTCTTTTTTGATTAATCCTAGGAATGTCGTTAGGGTAGATA
AGATTGAGCGAGTGGTTTATTTTCGAAATGGCTCTAGCTGCTTAATTGCTCGTAGTAAAATGAACAGTGTTTTAACAACA
ATTGAGAACCTACATAGAGGAGATAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-122)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

52.61

100

0.526
  comE/comE1 Streptococcus equinus JB1

40.167

95.984

0.386