Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V6U69_RS09645 Genome accession   NZ_CP145867
Coordinates   2080055..2080378 (-) Length   107 a.a.
NCBI ID   WP_410534359.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2075055..2085378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS09625 (V6U69_09615) - 2075224..2075829 (-) 606 WP_247925193.1 response regulator -
  V6U69_RS09630 (V6U69_09620) - 2075810..2077372 (-) 1563 WP_070839445.1 hypothetical protein -
  V6U69_RS09635 (V6U69_09625) - 2077412..2079319 (-) 1908 WP_410533779.1 ABC transporter permease -
  V6U69_RS09640 (V6U69_09630) - 2079321..2080058 (-) 738 WP_002887184.1 ABC transporter ATP-binding protein -
  V6U69_RS09645 (V6U69_09635) rcrQ 2080055..2080378 (-) 324 WP_410534359.1 ATP-binding cassette domain-containing protein Regulator
  V6U69_RS09650 (V6U69_09640) - 2080705..2081025 (-) 321 WP_410533781.1 hypothetical protein -
  V6U69_RS09655 (V6U69_09645) - 2081361..2081690 (-) 330 WP_107372458.1 winged helix-turn-helix transcriptional regulator -
  V6U69_RS09660 (V6U69_09650) - 2081793..2081918 (+) 126 WP_037609435.1 hypothetical protein -
  V6U69_RS09665 (V6U69_09655) - 2081959..2083329 (+) 1371 WP_247925185.1 MFS transporter -
  V6U69_RS09670 (V6U69_09660) rpsI 2083676..2084068 (-) 393 WP_002888293.1 30S ribosomal protein S9 -
  V6U69_RS09675 (V6U69_09665) rplM 2084096..2084542 (-) 447 WP_002886374.1 50S ribosomal protein L13 -
  V6U69_RS09680 (V6U69_09670) - 2084793..2084993 (-) 201 WP_002886373.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12544.38 Da        Isoelectric Point: 7.8573

>NTDB_id=854005 V6U69_RS09645 WP_410534359.1 2080055..2080378(-) (rcrQ) [Streptococcus salivarius strain KSS10]
MSGGQKQRISLARELVTTPRILVLDEPTSALDVKTERIIQKNVEALHCTRVLVTHRLNTVEKADKILIMDNGKIIDYGNH
YYLYKNNKYYCDLYDSYMNKYQEEEAK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=854005 V6U69_RS09645 WP_410534359.1 2080055..2080378(-) (rcrQ) [Streptococcus salivarius strain KSS10]
ATATCTGGAGGTCAAAAACAACGGATTTCTTTAGCAAGAGAACTTGTAACCACCCCTAGAATCTTAGTTCTTGACGAACC
TACATCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGGTTTTGGTTA
CCCACAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGCAAAATTATTGACTATGGAAACCAT
TATTATTTGTACAAAAATAATAAGTATTATTGTGACTTATATGACTCGTATATGAATAAATATCAGGAGGAAGAGGCAAA
ATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(1-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.667

100

0.421
  comA Streptococcus mitis NCTC 12261

44.792

89.72

0.402
  rcrP Streptococcus mutans UA159

39.815

100

0.402
  comA Streptococcus pneumoniae D39

43.75

89.72

0.393
  comA Streptococcus pneumoniae R6

43.75

89.72

0.393
  comA Streptococcus mitis SK321

43.75

89.72

0.393
  comA Streptococcus pneumoniae TIGR4

43.75

89.72

0.393
  comA Streptococcus pneumoniae Rx1

43.75

89.72

0.393
  comA/nlmT Streptococcus mutans UA159

42.708

89.72

0.383
  comA Streptococcus gordonii str. Challis substr. CH1

40.625

89.72

0.364