Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   QYM01_RS06945 Genome accession   NZ_CP129527
Coordinates   1462682..1463392 (-) Length   236 a.a.
NCBI ID   WP_012677635.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1457682..1468392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS06930 (QYM01_06930) - 1458590..1460332 (-) 1743 WP_301899386.1 restriction endonuclease FokI C-terminal domain-containing protein -
  QYM01_RS06935 (QYM01_06935) vicX 1460524..1461333 (-) 810 WP_301899387.1 MBL fold metallo-hydrolase Regulator
  QYM01_RS06940 (QYM01_06940) vicK 1461337..1462689 (-) 1353 WP_014623188.1 cell wall metabolism sensor histidine kinase VicK Regulator
  QYM01_RS06945 (QYM01_06945) vicR 1462682..1463392 (-) 711 WP_012677635.1 response regulator YycF Regulator
  QYM01_RS06950 (QYM01_06950) - 1463598..1464617 (-) 1020 WP_301899389.1 DUF3114 domain-containing protein -
  QYM01_RS06955 (QYM01_06955) - 1464663..1465925 (-) 1263 WP_301899390.1 AMP-binding protein -
  QYM01_RS06960 (QYM01_06960) - 1465915..1467030 (-) 1116 WP_165622709.1 acetyl-CoA C-acyltransferase -
  QYM01_RS06965 (QYM01_06965) - 1467027..1467566 (-) 540 WP_043053282.1 hypothetical protein -
  QYM01_RS06970 (QYM01_06970) - 1467698..1467847 (-) 150 Protein_1353 aquaporin family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26967.81 Da        Isoelectric Point: 4.9038

>NTDB_id=854001 QYM01_RS06945 WP_012677635.1 1462682..1463392(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKAYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=854001 QYM01_RS06945 WP_012677635.1 1462682..1463392(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGAAGAAAATACTGATTGTTGATGATGAAAAGCCGATTTCTGATATCATTAAATTTAATCTGACAAAGGAAGGCTATGA
TACGGTCACAGCATTTGATGGCAAAGAGGCCGTTGCAGTCTTTGAAGAGGAAAAGCCAGATTTGATTATTTTGGATTTGA
TGCTTCCTGAGCTAGATGGCCTTGAGGTAGCCAAGGAAATCCGCAAGACCAGCCATATTCCTATCATCATGCTATCTGCT
AAGGATAGCGAATTTGATAAGGTGATTGGACTTGAAATAGGGGCTGATGATTATGTGACTAAGCCCTTTTCAAATCGTGA
GCTGCTGGCGCGTGTCAAGGCACATTTGCGTCGGACAGAGACTATTGAGACAGCAGTAGCCGAAGAAAATGCCTCCTCAG
GCTCTCAGGAGCTGACCATCGGCAATCTACAGATTTTACCAGATGCCTTTATCGCTAAAAAGCATGGTCAAGAGGTTGAG
CTGACCCATCGTGAATTTGAATTGTTGCATCACCTGGCAAACCATATTGGACAGGTCATGACACGTGAGCATTTGCTTGA
GACCGTATGGGGCTATGATTATTTTGGCGATGTCCGAACCGTTGACGTTACTGTCCGTCGCCTGCGTGAAAAAATAGAGG
ACACACCGAGTCGTCCGGAGTACATCTTGACAAGACGTGGTGTTGGGTACTACATGAAGGCTTATGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

89.407

100

0.894
  micA Streptococcus pneumoniae Cp1015

78.541

98.729

0.775
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  covR Streptococcus salivarius strain HSISS4

43.966

98.305

0.432
  scnR Streptococcus mutans UA159

37.607

99.153

0.373