Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QYM01_RS06935 Genome accession   NZ_CP129527
Coordinates   1460524..1461333 (-) Length   269 a.a.
NCBI ID   WP_301899387.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1455524..1466333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS06925 (QYM01_06925) - 1456638..1458569 (+) 1932 WP_301899385.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  QYM01_RS06930 (QYM01_06930) - 1458590..1460332 (-) 1743 WP_301899386.1 restriction endonuclease FokI C-terminal domain-containing protein -
  QYM01_RS06935 (QYM01_06935) vicX 1460524..1461333 (-) 810 WP_301899387.1 MBL fold metallo-hydrolase Regulator
  QYM01_RS06940 (QYM01_06940) vicK 1461337..1462689 (-) 1353 WP_014623188.1 cell wall metabolism sensor histidine kinase VicK Regulator
  QYM01_RS06945 (QYM01_06945) vicR 1462682..1463392 (-) 711 WP_012677635.1 response regulator YycF Regulator
  QYM01_RS06950 (QYM01_06950) - 1463598..1464617 (-) 1020 WP_301899389.1 DUF3114 domain-containing protein -
  QYM01_RS06955 (QYM01_06955) - 1464663..1465925 (-) 1263 WP_301899390.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29966.98 Da        Isoelectric Point: 5.5317

>NTDB_id=853999 QYM01_RS06935 WP_301899387.1 1460524..1461333(-) (vicX) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MSEDGFKYSILASGSTGNCFYLETPKRRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGIMARKYNLD
VYANEKTWQMIDERHMIGNLDVAQKHVFERGKTMTFGDIDIESFGVSHDAVDPQFYRIMKDNRSFVMLTDTGYVSDRLAG
IIANADGYLIESNHDVEILRAGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGNKTKKIYLGHLSQENNIKELAHMTMVN
QLAMADLGVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=853999 QYM01_RS06935 WP_301899387.1 1460524..1461333(-) (vicX) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGAGTGAGGATGGCTTTAAATATAGTATTTTAGCATCAGGATCGACAGGTAACTGCTTTTACTTGGAAACGCCCAAGAG
GCGATTGTTGATTGATGCAGGGCTGACTGGCAAGAAAATCACCAGTCTCCTTGCTGAGATTGATAGAAAGCCTGAGGATT
TAGATGCTATCTTGATTACCCACGAGCATTCCGACCATATTAAGGGCGTTGGAATCATGGCTCGAAAATATAACCTAGAC
GTCTATGCCAATGAAAAGACTTGGCAGATGATTGATGAGCGTCATATGATTGGTAACCTAGACGTAGCACAAAAGCATGT
CTTTGAAAGAGGTAAGACCATGACCTTTGGAGACATTGACATTGAGAGCTTTGGTGTTAGTCATGACGCTGTAGACCCAC
AGTTTTACCGCATTATGAAGGACAACAGGTCCTTTGTCATGCTGACAGATACAGGATATGTGAGTGACCGCTTGGCCGGA
ATCATTGCAAATGCTGATGGCTACTTGATTGAGTCAAATCACGATGTAGAGATATTGCGAGCCGGCTCATACCCTTGGAG
CCTAAAGCAGCGAATCTTATCTGACCTAGGGCATTTATCCAATGAAGATGGTGCTGGCGCTATGATTCGAAGCTTGGGCA
ACAAAACAAAGAAAATCTACCTCGGTCACCTAAGCCAGGAGAACAATATCAAAGAATTAGCCCATATGACAATGGTCAAT
CAGCTAGCAATGGCAGATTTAGGTGTTGGAACAGATTTTACTGTTCATGATACCTCACCAGATACCGCCTGCCCCTTGAC
AGACATCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

74.349

100

0.743