Detailed information NTG0853968

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: QYM01_RS00720
• Genome accession: NZ_CP129527
• Coordinates: 123934..124968 (+)
• Length: 344 a.a.
• NCBI ID: WP_301900724.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain BJ-1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 118934..129968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYM01_RS00700 (QYM01_00700)	-	119328..119693 (+)	366	WP_012514777.1	DUF1033 family protein	-
QYM01_RS00705 (QYM01_00705)	-	120230..122233 (+)	2004	WP_012678808.1	DUF1430 domain-containing protein	-
QYM01_RS00710 (QYM01_00710)	-	122235..122882 (+)	648	WP_301899868.1	ATP-binding cassette domain-containing protein	-
QYM01_RS00715 (QYM01_00715)	comGA/cglA	123063..124001 (+)	939	WP_206152300.1	competence type IV pilus ATPase ComGA	Machinery gene
QYM01_RS00720 (QYM01_00720)	comYB	123934..124968 (+)	1035	WP_301900724.1	competence type IV pilus assembly protein ComGB	Machinery gene
QYM01_RS00725 (QYM01_00725)	comGC/cglC	124969..125292 (+)	324	WP_014622142.1	competence type IV pilus major pilin ComGC	Machinery gene
QYM01_RS00730 (QYM01_00730)	comGD	125270..125695 (+)	426	WP_012514783.1	competence type IV pilus minor pilin ComGD	-
QYM01_RS00735 (QYM01_00735)	comGE	125652..125942 (+)	291	WP_014622143.1	competence type IV pilus minor pilin ComGE	-
QYM01_RS00740 (QYM01_00740)	comYF	125929..126363 (+)	435	WP_012677237.1	competence type IV pilus minor pilin ComGF	Machinery gene
QYM01_RS00745 (QYM01_00745)	comGG	126341..126703 (+)	363	WP_012514785.1	competence type IV pilus minor pilin ComGG	-
QYM01_RS00750 (QYM01_00750)	comYH	126765..127718 (+)	954	WP_301899869.1	class I SAM-dependent methyltransferase	Machinery gene
QYM01_RS00755 (QYM01_00755)	-	127778..128977 (+)	1200	WP_012678817.1	acetate kinase	-
QYM01_RS00760 (QYM01_00760)	-	129588..129770 (-)	183	WP_206158901.1	class IIb bacteriocin, lactobin A/cerein 7B family	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39457.71 Da
• Isoelectric Point: 9.3610

>NTDB_id=853968 QYM01_RS00720 WP_301900724.1 123934..124968(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MISFLQRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLPPVYVTNMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYCPIIGVLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFRKELSLMIEYGDIKSKLGRELDIYAQESWETFFSQLNRATQWIQPIIFLL
VAVIIVMIYAAILLPIYQHMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=853968 QYM01_RS00720 WP_301900724.1 123934..124968(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAAGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGTTTTAATTTAACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TCTTACCACCAGTCTATGTTACAAATATGGAAGCAAGCCTATTAAAGGGCAATGGCCTTGCTGATATGCTGGCAGCCTTA
GGCTACTCTGATGCTGTCATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGATTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTAGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCTTTTTACCTATATGCTAGGTCCTG
TAGCAGGCTAAGGCTATTTAGTCAGCTGAGCTATTGTCCTATCATTGGAGTCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAGAAAGGAGCTAAGCCTAATGATTGAATATGGCGACATCAAATCAAAGCTTGGTCGGGAGCTAGATATCT
ATGCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTCAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTACTG
GTTGCTGTGATTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA159	54.277	98.547	0.535
comYB	Streptococcus mutans UA140	54.277	98.547	0.535
comYB	Streptococcus gordonii str. Challis substr. CH1	52.059	98.837	0.515
comGB/cglB	Streptococcus pneumoniae Rx1	48.949	96.802	0.474
comGB/cglB	Streptococcus mitis SK321	48.949	96.802	0.474
comGB/cglB	Streptococcus pneumoniae R6	48.949	96.802	0.474
comGB/cglB	Streptococcus pneumoniae TIGR4	48.949	96.802	0.474
comGB/cglB	Streptococcus pneumoniae D39	48.949	96.802	0.474
comGB/cglB	Streptococcus mitis NCTC 12261	48.503	97.093	0.471
comGB	Lactococcus lactis subsp. cremoris KW2	45.723	98.547	0.451