Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V6U69_RS05865 Genome accession   NZ_CP145867
Coordinates   1301268..1302938 (-) Length   556 a.a.
NCBI ID   WP_410533371.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1296268..1307938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS05830 (V6U69_05830) - 1296305..1296997 (-) 693 WP_000240128.1 phosphoglycerate mutase -
  V6U69_RS05835 (V6U69_05835) - 1297253..1298188 (+) 936 WP_060971492.1 dihydroorotate oxidase -
  V6U69_RS05840 (V6U69_05840) - 1298251..1298451 (-) 201 WP_002890779.1 hypothetical protein -
  V6U69_RS05845 (V6U69_05845) - 1298511..1298786 (-) 276 WP_002884048.1 HU family DNA-binding protein -
  V6U69_RS05850 (V6U69_05850) - 1298923..1299495 (-) 573 WP_037601109.1 YpmS family protein -
  V6U69_RS05855 (V6U69_05855) - 1299488..1300363 (-) 876 WP_073950072.1 SGNH/GDSL hydrolase family protein -
  V6U69_RS05860 (V6U69_05860) - 1300356..1301198 (-) 843 WP_073950070.1 DegV family protein -
  V6U69_RS05865 (V6U69_05865) recN 1301268..1302938 (-) 1671 WP_410533371.1 DNA repair protein RecN Machinery gene
  V6U69_RS05870 (V6U69_05870) - 1302947..1303393 (-) 447 WP_002890762.1 arginine repressor -
  V6U69_RS05875 (V6U69_05875) - 1303380..1304207 (-) 828 WP_002884054.1 TlyA family RNA methyltransferase -
  V6U69_RS05880 (V6U69_05880) - 1304200..1305072 (-) 873 WP_410533373.1 polyprenyl synthetase family protein -
  V6U69_RS05885 (V6U69_05885) - 1305072..1305287 (-) 216 WP_002884058.1 exodeoxyribonuclease VII small subunit -
  V6U69_RS05890 (V6U69_05890) xseA 1305277..1306605 (-) 1329 WP_173018399.1 exodeoxyribonuclease VII large subunit -
  V6U69_RS05895 (V6U69_05895) - 1306792..1307553 (-) 762 WP_002890759.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62375.39 Da        Isoelectric Point: 4.5371

>NTDB_id=853970 V6U69_RS05865 WP_410533371.1 1301268..1302938(-) (recN) [Streptococcus salivarius strain KSS10]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHITMLDAFGDKEFFQTKKE
YQEYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQITEIEAVSLKSGEDLALMQERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDFLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIATALEAEIKNELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=853970 V6U69_RS05865 WP_410533371.1 1301268..1302938(-) (recN) [Streptococcus salivarius strain KSS10]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCTATGAATCTTATGTTGGGTGCTAGGGCTTCTAGTGAGG
TCGTCCGTCATTCAGCATCTAAGGCTGAAATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGATAATGGAATTCCTGTTGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGTAT
CAATGGGCAGATGGTCAATTTAACGACGCTTAAGGCTGTTGGGCACTTCTTGGTAGATATCCATGGACAACATGACCAGG
AAGAGCTTATGAAACCTGCTCTGCATATTACCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAGACTAAGAAAGAG
TACCAGGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCTGTTCTAGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGTTAGCATTTCAGATTACAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCTTTGATGC
AGGAGCGAGACAAGCTTCTTAATCATAAGCAAATTGCTGATACCTTAACAAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGCCTTTCAAATGTTCGTTCTGCCATGAATGACCTCCAGTCTCTTGAAGAGTATGACTCTGATTACAAAGAACT
CTCTGGAAATCTATCAGAAGCCTATTATGTTCTGGAAGATGTCACTAAGCAACTAGGTGATTTTTTGGATAATCTGGACT
TTGATGCTGGGCGTTTGCAAGAGATTGAACACCGCTTAGATACCATTAATGCCATTACTCGTAAATATGGTGGGACTGTC
GATGACGTCTTGGATTATCTGGAAAATTCAAGTAAAGAATACAATCTTCTGACAGGAAACTCTAGCTCGTCAGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAGGACCTGCTTGCGTCTGCGGAGACCCTACAAACAGCACGCCATCAAATTGCTA
CGGCTCTTGAAGCTGAGATTAAGAACGAGTTATGCGACCTCTATATGGATAAGGCTGATTTTAAAGTTACCTTTACTAAG
GGGAAATTTAATCGTGATGGTAATGAGCAGGTTGAGTTTTACATCTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTAGCTTCAGGTGGTGAATTATCTCGACTCATGTTAGCAATTAAGTCAGCCTTTGCCCGCAAAGAAGATAAAACAA
GTATCGTCTTTGATGAGGTTGACACTGGCGTTTCAGGACGTGTTGCCCAAGCCATCGCTCAGAAGATTCATAAGATTGGG
AGTCATGGTCAGGTCTTGGCCATCAGTCACCTTCCGCAAGTTATTGCTATTGCTGATTATCAGTTCTTTATTTCTAAGGA
AAGCGATAACGAGACAACTGTCTCTCGTGTTCGTCTTTTGACACCTGAGGAAAGGGTGCAAGAAATCGCTAAGATGTTAG
CAGGTGATAACGTGACGGAGGCTGCCTTGAGTCAAGCAAGAGCTTTGTTAAAGGTGGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.979

100

0.453