Detailed information NTG0853970

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: QYM01_RS00740
• Genome accession: NZ_CP129527
• Coordinates: 125929..126363 (+)
• Length: 144 a.a.
• NCBI ID: WP_012677237.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain BJ-1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 120929..131363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYM01_RS00710 (QYM01_00710)	-	122235..122882 (+)	648	WP_301899868.1	ATP-binding cassette domain-containing protein	-
QYM01_RS00715 (QYM01_00715)	comGA/cglA	123063..124001 (+)	939	WP_206152300.1	competence type IV pilus ATPase ComGA	Machinery gene
QYM01_RS00720 (QYM01_00720)	comYB	123934..124968 (+)	1035	WP_301900724.1	competence type IV pilus assembly protein ComGB	Machinery gene
QYM01_RS00725 (QYM01_00725)	comGC/cglC	124969..125292 (+)	324	WP_014622142.1	competence type IV pilus major pilin ComGC	Machinery gene
QYM01_RS00730 (QYM01_00730)	comGD	125270..125695 (+)	426	WP_012514783.1	competence type IV pilus minor pilin ComGD	-
QYM01_RS00735 (QYM01_00735)	comGE	125652..125942 (+)	291	WP_014622143.1	competence type IV pilus minor pilin ComGE	-
QYM01_RS00740 (QYM01_00740)	comYF	125929..126363 (+)	435	WP_012677237.1	competence type IV pilus minor pilin ComGF	Machinery gene
QYM01_RS00745 (QYM01_00745)	comGG	126341..126703 (+)	363	WP_012514785.1	competence type IV pilus minor pilin ComGG	-
QYM01_RS00750 (QYM01_00750)	comYH	126765..127718 (+)	954	WP_301899869.1	class I SAM-dependent methyltransferase	Machinery gene
QYM01_RS00755 (QYM01_00755)	-	127778..128977 (+)	1200	WP_012678817.1	acetate kinase	-
QYM01_RS00760 (QYM01_00760)	-	129588..129770 (-)	183	WP_206158901.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
QYM01_RS00765 (QYM01_00765)	-	129788..130039 (-)	252	WP_206158902.1	bacteriocin class II family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16155.70 Da
• Isoelectric Point: 10.1988

>NTDB_id=853970 QYM01_RS00740 WP_012677237.1 125929..126363(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFGLSSSQITAVGQQVIIKLKWQSGLERTFIYAFQEKG

Nucleotide

• Length: 435 bp

>NTDB_id=853970 QYM01_RS00740 WP_012677237.1 125929..126363(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGCCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (41-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	52.083	100	0.521
comYF	Streptococcus mutans UA159	51.389	100	0.514
comGF/cglF	Streptococcus mitis SK321	50.365	95.139	0.479
comGF/cglF	Streptococcus mitis NCTC 12261	49.635	95.139	0.472
comGF	Lactococcus lactis subsp. cremoris KW2	47.143	97.222	0.458
comGF/cglF	Streptococcus pneumoniae D39	48.175	95.139	0.458
comGF/cglF	Streptococcus pneumoniae R6	48.175	95.139	0.458
comGF/cglF	Streptococcus pneumoniae TIGR4	48.175	95.139	0.458
comGF/cglF	Streptococcus pneumoniae Rx1	48.175	95.139	0.458