Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V6U69_RS05920 Genome accession   NZ_CP145867
Coordinates   1310851..1313052 (-) Length   733 a.a.
NCBI ID   WP_410533379.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1305851..1318052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS05895 (V6U69_05895) - 1306792..1307553 (-) 762 WP_002890759.1 hypothetical protein -
  V6U69_RS05900 (V6U69_05900) nth 1307681..1308325 (-) 645 WP_410533375.1 endonuclease III -
  V6U69_RS05905 (V6U69_05905) - 1308325..1309023 (-) 699 WP_002890756.1 DnaD domain-containing protein -
  V6U69_RS05910 (V6U69_05910) metA 1309095..1310039 (-) 945 WP_060971484.1 homoserine O-succinyltransferase -
  V6U69_RS05915 (V6U69_05915) - 1310212..1310730 (-) 519 WP_410533377.1 adenine phosphoribosyltransferase -
  V6U69_RS05920 (V6U69_05920) recJ 1310851..1313052 (-) 2202 WP_410533379.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V6U69_RS05925 (V6U69_05925) - 1313363..1313767 (-) 405 WP_410533381.1 GNAT family N-acetyltransferase -
  V6U69_RS05930 (V6U69_05930) - 1313802..1314026 (-) 225 Protein_1153 class I SAM-dependent methyltransferase -
  V6U69_RS05935 (V6U69_05935) - 1314038..1314805 (-) 768 WP_410533383.1 SDR family NAD(P)-dependent oxidoreductase -
  V6U69_RS05940 (V6U69_05940) rnz 1314805..1315734 (-) 930 WP_073685418.1 ribonuclease Z -
  V6U69_RS05945 (V6U69_05945) - 1315766..1316407 (-) 642 WP_410533385.1 cystathionine beta-lyase -
  V6U69_RS05950 (V6U69_05950) hflX 1316400..1317638 (-) 1239 WP_107373301.1 GTPase HflX -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82234.44 Da        Isoelectric Point: 4.3725

>NTDB_id=853971 V6U69_RS05920 WP_410533379.1 1310851..1313052(-) (recJ) [Streptococcus salivarius strain KSS10]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGITTEDALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERVGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGRLSEILCHYVYDNDIDTTAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGLPTVEEASDTEPAVVLNTLPNSATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSKIFQDLKHLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=853971 V6U69_RS05920 WP_410533379.1 1310851..1313052(-) (recJ) [Streptococcus salivarius strain KSS10]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCTAAAGAACATGG
ACTGGCAGAAACAGCAGCCAAGATTGCCTATGAACGTGGCATTACGACAGAAGATGCTCTTGAAGACTTTCTAAAGGCTG
ATTTATCACACCTTCATGATCCTTATCTTCTTCATGATATGGATAAGGCAGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TATGAACAAATCTTAGTCTATGGAGACTATGATGCAGATGGTATGACATCAGCATCGATTGTCAAGGAAGCCCTTGAAAT
GATGGGGGCTGAAGCTAGAGTCTATTTGCCTAACCGGTTTACAGATGGTTATGGGCCAAACGAAAGTGTCTACAAGTACT
TCATTGAACAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGGGTAGCGGGGAATGAGGCTATCGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGCCGGCACAACTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGTTGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACTGAGATGTTGGACTTGGTAGCTATTGGTACCATTGCCGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTAAAGACTACTGAGCGTGTTGGACTGCAAGAGTTACTCCGTATTTCAGATGT
AGACCCAACAACGATTTCTGAAGAAACGGTCGGTTTCAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTGCTGACCGGATTTGATGATGAAGAAGCCCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCCATGACTATGGTGGATTTGGATAAACCTGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGCGTCCTAGGTATTGTGGCGGGGCGTATCATGGAACAAATCAGTCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGTTCCGCTCGTAGTTTGGAATCTATCAACATCTTCCATGCCCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACATGCTGGAGCGGCGGGGATGACCCTTCCAGAAGAAAATCTTGGACGACT
ATCAGAGATTTTGTGTCATTATGTCTACGATAATGACATTGATACGACTGCCAAAAATACGTTAAATTTAGACGAGGAGC
TCCAACTCAGTGAGCTTAGCTTGGATACCATTAAGAGCCTAGAAAAACTAGCACCTTTTGGCATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACTATGGGACAAAATGGAGCCCATCTTAAGTTTAAGGTTAA
GCAAGGCAAGGATAGCTTTGATGTTGTGGCTTTTAATAAAGGTCATTTGCTTCAAGAATTTCAACAAGCTCAGGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTCCAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAGTTATTTGATTTTCGCTCAAAAAATATGGCACTGCCTGAAGGCCTACCAACGGTAGAAGAAGCATCAGACAC
TGAACCTGCAGTTGTCCTCAACACCCTACCGAATTCAGCAACGGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAGG
CTATCTATTTTAAAAATAGTATTAAGGAAGCCTATTATCTGACAGGTTATGGAACTAGAGAGCAATTTGCAAGACTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTTCGCTATAAACTGGATGAGCTCAGTCATTACCTTAAAATCGATAAGAT
ACTTCTGATTAAGATGATTCAGATTTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGCAAGATTTTCCAAGATCTTAAACATCTCGTCAAGTTCCAAGAACTTATGGCT
TTAGGGACACCACAAGAAATTTATGACTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-731)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-431)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.663

100

0.679
  recJ Bacillus subtilis subsp. subtilis str. 168

37.532

100

0.398