Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J3989_RS03630 Genome accession   NZ_AP024489
Coordinates   728856..730352 (+) Length   498 a.a.
NCBI ID   WP_101115890.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 723856..735352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS03620 (NMNIID777_06690) putP 726512..728038 (-) 1527 WP_002220352.1 sodium/proline symporter PutP -
  J3989_RS03625 (NMNIID777_06700) - 728521..728841 (+) 321 WP_207177244.1 accessory factor UbiK family protein -
  J3989_RS03630 (NMNIID777_06710) comM 728856..730352 (+) 1497 WP_101115890.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J3989_RS03635 (NMNIID777_06720) ftsN 730458..731303 (+) 846 WP_002216509.1 cell division protein FtsN -
  J3989_RS03640 (NMNIID777_06730) dsbA1 731306..731950 (+) 645 WP_002216511.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  J3989_RS03645 (NMNIID777_06740) - 731983..732804 (+) 822 WP_101115891.1 undecaprenyl-diphosphate phosphatase -
  J3989_RS03660 (NMNIID777_06750) - 733386..734576 (-) 1191 WP_050584727.1 class I SAM-dependent methyltransferase -
  J3989_RS03665 (NMNIID777_06760) mraZ 734882..735337 (+) 456 WP_002212482.1 division/cell wall cluster transcriptional repressor MraZ -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53612.64 Da        Isoelectric Point: 6.8995

>NTDB_id=85343 J3989_RS03630 WP_101115890.1 728856..730352(+) (comM) [Neisseria meningitidis strain NIID777]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECQVPQMPFEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARDKQYARQGKVNAALSVSELDSQARIQKEAQEALGNLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=85343 J3989_RS03630 WP_101115890.1 728856..730352(+) (comM) [Neisseria meningitidis strain NIID777]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGTCTGCCGCATTTCAACATCGTCGGGCTGCCCGATACGGAAGTCAAAGAAAGTCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAACTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAATGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGCCAAGTTCCTCAGATGCCGTTTGAACA
TGGCGGACAACCTGATTTGTGCGATGTGAAAGGTCAGCACACCGCGCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAGCGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAACAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGTGCCAGTGCGGCGGCTATGGTCGGCGGCGGTTCCGACCCGCGTCCGGGCGAGATTTCAT
TGGCGCACCACGGCGTATTGTTTTTGGACGAGCTGCCCGAGTTCGACCGCAAAGTTTTGGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCTGCCAAATTCCAACTTGTTGCCGCCATGAA
CCCCTGCCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGTTGCACGCCCGAAAGCGTCGCGCGTTACCGCAGCA
AGATTTCTGGGCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCGAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGGGAAAGCAGCGCGTCCGTTTTGGAACGCGTTATCGCCGCCCGCGACAAACAATACGCACGGCAGGGCAAAGT
CAACGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCCGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGCAACCTGT
TGGAAAAACTCTCCCTCTCCGCCCGCAGCTTCCACCGCATTATGCGCGTGGCGCGTACATTGGCGGATTTGGCAGGCGAC
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGTTTCCGCCGCGCTTTATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.988

100

0.534
  comM Vibrio campbellii strain DS40M4

52.515

99.799

0.524
  comM Haemophilus influenzae Rd KW20

49.9

100

0.5
  comM Glaesserella parasuis strain SC1401

49.206

100

0.498
  comM Legionella pneumophila str. Paris

46.535

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.535

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.026

100

0.44

Multiple sequence alignment