Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   J3989_RS03640 Genome accession   NZ_AP024489
Coordinates   731306..731950 (+) Length   214 a.a.
NCBI ID   WP_002216511.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 726306..736950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS03620 (NMNIID777_06690) putP 726512..728038 (-) 1527 WP_002220352.1 sodium/proline symporter PutP -
  J3989_RS03625 (NMNIID777_06700) - 728521..728841 (+) 321 WP_207177244.1 accessory factor UbiK family protein -
  J3989_RS03630 (NMNIID777_06710) comM 728856..730352 (+) 1497 WP_101115890.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J3989_RS03635 (NMNIID777_06720) ftsN 730458..731303 (+) 846 WP_002216509.1 cell division protein FtsN -
  J3989_RS03640 (NMNIID777_06730) dsbA1 731306..731950 (+) 645 WP_002216511.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  J3989_RS03645 (NMNIID777_06740) - 731983..732804 (+) 822 WP_101115891.1 undecaprenyl-diphosphate phosphatase -
  J3989_RS03660 (NMNIID777_06750) - 733386..734576 (-) 1191 WP_050584727.1 class I SAM-dependent methyltransferase -
  J3989_RS03665 (NMNIID777_06760) mraZ 734882..735337 (+) 456 WP_002212482.1 division/cell wall cluster transcriptional repressor MraZ -
  J3989_RS03670 (NMNIID777_06770) rsmH 735334..736320 (+) 987 WP_002218781.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  J3989_RS03675 (NMNIID777_06780) ftsL 736317..736580 (+) 264 WP_002232818.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23949.97 Da        Isoelectric Point: 9.8294

>NTDB_id=85344 J3989_RS03640 WP_002216511.1 731306..731950(+) (dsbA1) [Neisseria meningitidis strain NIID777]
MKLKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYRIDSTPTVVVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQPPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=85344 J3989_RS03640 WP_002216511.1 731306..731950(+) (dsbA1) [Neisseria meningitidis strain NIID777]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGTAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTCTGGCCAGGATGGCGGCTGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCCGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGGCTGTTGCCGGAAAATGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATACCGCATCGACAGCACGCCGACCGTTGTCGTCGGCGGAAAATACCGCGTTATCTTCAATAACGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGCCCCCTGCTGTACAAA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

56.684

87.383

0.495
  dsbA2 Neisseria meningitidis MC58

51.075

86.916

0.444

Multiple sequence alignment