Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QYQ96_RS00180 Genome accession   NZ_CP129421
Coordinates   39397..40512 (+) Length   371 a.a.
NCBI ID   WP_304572332.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 34397..45512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS00160 (QYQ96_00160) rsmB 35321..36601 (-) 1281 WP_304572330.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QYQ96_RS00165 (QYQ96_00165) fmt 36656..37603 (-) 948 WP_304572331.1 methionyl-tRNA formyltransferase -
  QYQ96_RS00170 (QYQ96_00170) def 37621..38130 (-) 510 WP_000115005.1 peptide deformylase -
  QYQ96_RS00175 (QYQ96_00175) - 38270..39397 (+) 1128 WP_055028382.1 LysM peptidoglycan-binding domain-containing protein -
  QYQ96_RS00180 (QYQ96_00180) dprA 39397..40512 (+) 1116 WP_304572332.1 DNA-processing protein DprA Machinery gene
  QYQ96_RS00185 (QYQ96_00185) - 40515..40991 (+) 477 WP_304572333.1 DUF494 family protein -
  QYQ96_RS00190 (QYQ96_00190) - 41007..41573 (+) 567 WP_055028380.1 type I DNA topoisomerase -
  QYQ96_RS00195 (QYQ96_00195) - 41647..42780 (-) 1134 WP_304572334.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QYQ96_RS00200 (QYQ96_00200) purE 42784..43269 (-) 486 WP_095468040.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QYQ96_RS00205 (QYQ96_00205) - 43438..43995 (+) 558 WP_304572335.1 L-threonylcarbamoyladenylate synthase -
  QYQ96_RS00210 (QYQ96_00210) hemF 44014..44931 (+) 918 WP_304572336.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40232.25 Da        Isoelectric Point: 6.7678

>NTDB_id=853129 QYQ96_RS00180 WP_304572332.1 39397..40512(+) (dprA) [Vibrio metoecus strain ZF102]
MKDQDLAIWLALSFTPKLGSRTISHLLATQTPTQLQSLTPKQWLALGLKSEQLVYLTTEAAKQAEQCLQWRDGAKNRYIV
TPHCALYPRLLKEISVPPPVLFIEGLWEVLHDPAVAIVGSRDATIDGRQIARQFAGELAQSGLVVVSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLTQIYPKQHQGLAERIITQGALVSEFAPYVPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIYNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSERVPYQPTLFSAQQGDEELPFPEL
LANVGVEATPIDILASRTHIPVQDVMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=853129 QYQ96_RS00180 WP_304572332.1 39397..40512(+) (dprA) [Vibrio metoecus strain ZF102]
ATGAAGGATCAGGACTTAGCCATTTGGCTCGCGCTTAGCTTTACTCCCAAACTGGGTAGCAGGACGATTTCCCATCTCCT
TGCTACCCAAACGCCAACTCAGTTGCAAAGCCTGACACCTAAACAGTGGCTAGCACTTGGGCTCAAATCAGAACAATTGG
TGTATTTAACCACAGAAGCCGCCAAGCAAGCAGAACAGTGTTTGCAATGGCGGGATGGTGCGAAAAACCGCTACATAGTG
ACGCCGCATTGCGCGCTTTATCCCCGCTTATTAAAAGAAATTTCAGTACCACCTCCAGTATTGTTTATTGAAGGGTTATG
GGAAGTTTTACATGATCCCGCTGTTGCCATCGTCGGCAGCCGTGACGCTACAATTGATGGTCGGCAGATTGCGCGGCAGT
TTGCAGGTGAGCTAGCTCAATCAGGGTTAGTGGTGGTGAGTGGTCTTGCGTTGGGGATTGATGGATATGCCCATGATGGT
GCTTTGCAAGCGCAAGGGCAAACTGTGGCAGTTTTAGGTTCTGGTTTGACTCAAATCTACCCAAAACAGCATCAAGGACT
CGCTGAGCGGATTATTACACAAGGCGCTTTAGTCTCGGAATTTGCACCTTATGTGCCTCCTAAAGCGGATCATTTTCCAC
GGCGTAACCGGATTATCAGTGGGTTATCGTTGGGGGTGGTGGTGGTTGAAGCGGCGGAGAAGAGTGGATCTCTCATCACC
GCGCGTTATGCGGCAGAGCAGGGGCGTGAGGTTTTTGTTGTTCCCGGTTCGATTTACAATGCTGCCAGCCAGGGCAGTAA
TCAGTTAATTCGCCAAGGCGCCTGTTTAGTGCAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTCACTTGGT
CACTCTCTGAGCGGGTACCTTACCAACCCACACTTTTTTCTGCTCAGCAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAGTAGAGGCTACACCTATTGATATTCTTGCAAGCCGGACCCATATACCGGTTCAAGATGTCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

89.488

100

0.895
  dprA Vibrio campbellii strain DS40M4

57.838

99.73

0.577
  dprA Glaesserella parasuis strain SC1401

44.355

100

0.445
  dprA Legionella pneumophila strain ERS1305867

41.823

100

0.42
  dprA Neisseria meningitidis MC58

37.624

100

0.41
  dprA Neisseria meningitidis strain C311

37.624

100

0.41
  dprA Haemophilus influenzae Rd KW20

44.144

89.757

0.396
  dprA Neisseria gonorrhoeae strain FA1090

36.409

100

0.394
  dprA Acinetobacter baumannii D1279779

39.782

98.922

0.394
  dprA Acinetobacter baumannii strain A118

39.51

98.922

0.391
  dprA Neisseria gonorrhoeae MS11

36.16

100

0.391
  dprA Acinetobacter baylyi ADP1

38.378

99.73

0.383