Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QYQ96_RS00105 Genome accession   NZ_CP129421
Coordinates   23551..25077 (+) Length   508 a.a.
NCBI ID   WP_304572328.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 18551..30077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS00090 (QYQ96_00090) ilvE 20125..21063 (-) 939 WP_000201999.1 branched-chain-amino-acid transaminase -
  QYQ96_RS00095 (QYQ96_00095) ilvM 21075..21359 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  QYQ96_RS00100 (QYQ96_00100) ilvG 21371..23017 (-) 1647 WP_304572327.1 acetolactate synthase 2 catalytic subunit -
  QYQ96_RS00105 (QYQ96_00105) comM 23551..25077 (+) 1527 WP_304572328.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QYQ96_RS00110 (QYQ96_00110) - 25167..26051 (+) 885 WP_000881901.1 acyltransferase -
  QYQ96_RS00115 (QYQ96_00115) - 26128..26730 (-) 603 WP_000732282.1 thiol:disulfide interchange protein DsbA/DsbL -
  QYQ96_RS00120 (QYQ96_00120) - 26761..27747 (-) 987 WP_304572750.1 serine/threonine protein kinase -
  QYQ96_RS00125 (QYQ96_00125) ccoG 27795..29219 (-) 1425 WP_000076153.1 cytochrome c oxidase accessory protein CcoG -
  QYQ96_RS00130 (QYQ96_00130) - 29481..29747 (-) 267 WP_000649656.1 DUF1040 family protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55135.15 Da        Isoelectric Point: 8.3637

>NTDB_id=853128 QYQ96_RS00105 WP_304572328.1 23551..25077(+) (comM) [Vibrio metoecus strain ZF102]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLENYEFIGELALSGEIRGVKGVLPAALAANQVNRCLVVPHSNGDQAALVGSERHKSAQSL
LEVCADLCGQQNLSLFQSSPSVQEVSSHTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMS
DEEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPL
ESGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGD
RGESTAAVRQRVLLARTRMLERSGKVNALLQSREIEQYCSLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEA
QIARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=853128 QYQ96_RS00105 WP_304572328.1 23551..25077(+) (comM) [Vibrio metoecus strain ZF102]
ATGGGACTTGCGATCATTCACAGCCGCGCCAGTATTGGCGTGCAGGCTCCTCCGGTTACGGTTGAGGTTCACATCAGTAA
TGGAATGCCGGGGTTTACCTTAGTTGGGTTGCCGGAAACCACAGTGAAAGAATCGCGGGATCGAGTTCGTAGCGCGATCA
TTAATTCTCGATTTGAGTTTCCGGCGAAACGCATTACGGTCAATTTAGCCCCTGCCGATCTGCCCAAAGAGGGGGGACGT
TTCGATCTTCCAATTGCACTTGGAATTTTGGCCGCCTCGGATCAAATTGCGCGAACTAAGCTTGAAAATTACGAATTTAT
CGGTGAATTGGCGCTATCGGGTGAGATTCGTGGTGTGAAAGGGGTATTGCCTGCCGCCCTCGCCGCTAATCAAGTTAATC
GCTGTTTAGTGGTGCCACACAGTAATGGTGATCAGGCTGCGTTGGTGGGGAGTGAGCGGCATAAATCTGCGCAAAGCTTA
TTGGAAGTGTGTGCCGATTTGTGTGGCCAGCAGAACCTGTCATTGTTTCAAAGTTCGCCCAGTGTGCAGGAAGTGAGTAG
TCATACGCGCGATCTGCAAGACATCATTGGTCAACAGCAAGGCAAACGTGCGTTGGAAATTGCTGCAGCTGGCAATCACA
ACCTATTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGT
GATGAAGAGGCAATGGAAACAGCCTCGATTGCCTCTCTTACGCAGCAAGAGATTAACCAACACAACTGGAAGTTACGCCC
TTTTCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTGGTCGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTC
TCGCCCATAATGGACTACTGTTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGCTTGATTCACTGCGTGAACCGCTG
GAATCGGGGGAGATCGTGATTTCGCGCGCGCAGGGGAAAACCCGTTTTCCTGCACGCTTTCAATTGGTCGGCGCGTTAAA
TCCAAGCCCCACGGGCTACTACGAAGGCAGTCAGGCACGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTT
CGGGCCCTTTGTTGGATCGCTTTGATATGTCGATAGAGATCCCTGCGTTACCCAAAGGCACGCTTGCCAATGGGGGCGAT
CGTGGTGAATCGACGGCCGCTGTGCGTCAACGGGTATTACTTGCTCGAACGCGAATGCTAGAACGGTCTGGCAAGGTGAA
TGCTTTACTGCAAAGCCGAGAAATTGAACAGTATTGCTCTTTGCTTAAAGCGGATGCGGAATTTCTAGAAAGCGCGCTGC
ATCGCTTGGGTTTATCAATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCG
CAGATCGCTCGTCCACATTTGGCCGAGGCATTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAGAA
CGTCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

97.441

100

0.974
  comM Vibrio campbellii strain DS40M4

85.236

100

0.852
  comM Haemophilus influenzae Rd KW20

67.456

99.803

0.673
  comM Glaesserella parasuis strain SC1401

63.953

100

0.65
  comM Legionella pneumophila str. Paris

50.905

97.835

0.498
  comM Legionella pneumophila strain ERS1305867

50.905

97.835

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.615

100

0.437