Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QYS50_RS10700 Genome accession   NZ_CP129415
Coordinates   2184818..2187073 (+) Length   751 a.a.
NCBI ID   WP_407569237.1    Uniprot ID   -
Organism   Deinococcus altitudinis strain LMG 24022     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2179818..2192073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS50_RS10680 (QYS50_10680) fusA 2180667..2182760 (-) 2094 WP_407569235.1 elongation factor G -
  QYS50_RS10685 (QYS50_10685) rpsG 2183002..2183472 (-) 471 WP_407540438.1 30S ribosomal protein S7 -
  QYS50_RS10690 (QYS50_10690) rpsL 2183763..2184170 (-) 408 WP_407571407.1 30S ribosomal protein S12 -
  QYS50_RS10695 (QYS50_10695) comEA 2184444..2184818 (+) 375 WP_407569236.1 ComEA family DNA-binding protein Machinery gene
  QYS50_RS10700 (QYS50_10700) comEC 2184818..2187073 (+) 2256 WP_407569237.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QYS50_RS10705 (QYS50_10705) - 2187083..2187580 (+) 498 WP_407569238.1 hypothetical protein -
  QYS50_RS10710 (QYS50_10710) nrdR 2187582..2188028 (-) 447 WP_407569239.1 transcriptional regulator NrdR -
  QYS50_RS10715 (QYS50_10715) - 2188035..2188811 (-) 777 WP_407569240.1 SDR family NAD(P)-dependent oxidoreductase -
  QYS50_RS10720 (QYS50_10720) - 2189053..2189931 (+) 879 WP_407569241.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  QYS50_RS10725 (QYS50_10725) phnC 2190037..2190783 (+) 747 WP_407569242.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 79981.68 Da        Isoelectric Point: 9.6282

>NTDB_id=853122 QYS50_RS10700 WP_407569237.1 2184818..2187073(+) (comEC) [Deinococcus altitudinis strain LMG 24022]
MQAGRPGTPAPAAPLPFPIRPVVVQAHWWERLPAPLPPLLGLMAGILLGFGSAWGWPLAALGLLLAGLSRRYWLLPLVLL
AGLLGQWREQTWERSPNVLADYVGGNLTLTGHWDGQFLALRDPPAQLALSPRPVAPPGAMMVKGVLTLPPGRRIPGGFDY
AFWLKSQGVQTVLAGAVVKSSTPEAGFRSWFRRGLASGLPPQEAALLTAIELGDKNALGNQDRNQAGFVDGYGVQDSFTR
AGLAHLMALSGQNVALLVGVLMLLFVRTPLGRVGLWRYPLMMLLLLGFLLLVGFAPSIVRAVSMGELALLGLWLGRGRLD
VYGVLSLTALGGLIAQPSWLFDVGFQLSYLAVLGLTLSGRAASLLPERWPEWLRLVLVASLLAEAATLPVVAGSFHQLSL
VGLPANLLAEGVMAALVPLGFLAGLMGPLGWLPNSLNGLLLDALLWVATTFARAPTLPWGVVAPVGFAAYAVFAAAGVLW
LRRAVRLWVPALVALLCVLCTALPSRLVPAREMVFIDVGQGDSTLIRANGLNMLLDGGGTPRGDYDVGAGTVVPALHAMG
VFRLDVVVATHADADHIEGLSSVLRLMPVGELWIGQRKTDDPVLTALLDAAKERHVPVREVRRGDSVQSGDIALNVLWPK
GAPWSTADNDNSVVVQLVSPKFRTAVLGDLPDPAETLLGLGHLDLLKAAHHGSRFSTGEAFLAETGPGNAVISVGRNTYG
HPNDDVLTRLTARNVNIWRTDRVGTIRWPIP

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=853122 QYS50_RS10700 WP_407569237.1 2184818..2187073(+) (comEC) [Deinococcus altitudinis strain LMG 24022]
ATGCAGGCCGGACGCCCCGGCACCCCGGCTCCGGCTGCTCCGCTTCCCTTTCCGATCCGCCCGGTGGTGGTGCAGGCCCA
CTGGTGGGAACGCCTACCTGCGCCGCTGCCACCGCTGCTGGGCCTGATGGCGGGCATCCTGCTGGGCTTCGGCAGCGCGT
GGGGCTGGCCGCTGGCGGCGCTGGGGCTGCTGCTCGCCGGACTCTCCCGCCGGTACTGGCTGCTGCCACTGGTGCTGCTG
GCCGGACTGCTGGGCCAGTGGCGCGAGCAGACCTGGGAACGCTCACCGAATGTGCTGGCTGATTACGTGGGCGGCAACCT
GACGCTGACGGGCCACTGGGACGGGCAGTTTCTGGCCCTGCGAGACCCACCAGCGCAGCTGGCACTCTCGCCCAGACCGG
TCGCCCCGCCCGGAGCCATGATGGTGAAGGGCGTGCTGACCCTGCCGCCCGGCAGACGCATTCCCGGCGGCTTCGACTAC
GCCTTCTGGCTGAAGTCGCAGGGCGTGCAGACGGTGCTGGCCGGCGCGGTGGTGAAGAGCAGCACCCCGGAAGCCGGATT
CAGGAGCTGGTTCCGGCGCGGGCTGGCCTCCGGGCTGCCGCCCCAGGAAGCGGCGCTGCTGACCGCCATCGAGCTGGGTG
ACAAGAACGCGCTGGGCAACCAGGACCGGAATCAGGCCGGGTTTGTGGACGGCTACGGCGTACAGGACAGCTTCACCCGC
GCCGGACTAGCGCACCTGATGGCGCTCAGCGGGCAGAACGTGGCGCTGCTGGTGGGCGTCCTGATGCTGCTGTTCGTCCG
CACGCCGCTGGGCCGCGTGGGGCTGTGGCGCTACCCGCTGATGATGCTCCTGCTGCTGGGATTCCTGCTGCTGGTCGGGT
TCGCCCCTAGCATCGTGCGGGCGGTGAGCATGGGCGAACTGGCGCTCCTGGGCCTGTGGCTGGGACGCGGGCGGCTCGAC
GTGTACGGCGTGCTGAGCCTCACCGCGCTGGGCGGGCTGATCGCGCAGCCGAGCTGGCTCTTCGACGTGGGCTTTCAGCT
CAGTTATCTGGCGGTGCTGGGCCTCACGCTTTCGGGCCGCGCCGCCTCGCTGCTTCCGGAACGCTGGCCCGAGTGGCTGC
GCCTCGTGCTGGTCGCCTCGCTGCTGGCCGAGGCCGCGACCCTTCCGGTGGTGGCGGGCAGCTTTCACCAGCTCTCCCTG
GTGGGTCTGCCCGCCAACCTGCTGGCCGAGGGCGTCATGGCCGCGCTGGTGCCGCTGGGCTTTCTGGCCGGGCTGATGGG
ACCGCTCGGCTGGCTGCCCAACTCGCTGAACGGGCTGCTGCTCGACGCGCTGCTGTGGGTGGCGACCACCTTCGCCAGGG
CCCCGACGCTGCCCTGGGGCGTGGTTGCCCCGGTGGGATTCGCGGCGTACGCGGTGTTCGCGGCGGCCGGGGTGCTGTGG
CTGCGGCGCGCCGTCCGACTCTGGGTTCCGGCGCTGGTGGCTCTGCTGTGCGTGCTGTGCACGGCGCTGCCTTCGCGGCT
CGTTCCGGCACGGGAGATGGTGTTCATCGACGTGGGGCAGGGCGACTCGACGCTCATTCGGGCGAACGGGCTGAATATGC
TGCTCGACGGTGGCGGTACTCCGAGGGGCGATTACGACGTGGGGGCCGGAACGGTGGTGCCCGCCCTGCACGCGATGGGG
GTCTTCAGACTCGACGTGGTGGTCGCCACCCACGCCGACGCCGACCACATCGAAGGCCTTTCAAGCGTGCTGCGGCTGAT
GCCGGTGGGTGAACTGTGGATCGGGCAGCGCAAGACGGACGACCCGGTACTGACGGCCCTGCTGGACGCGGCGAAGGAGC
GCCACGTTCCGGTGCGCGAGGTGAGGCGCGGCGACAGCGTGCAGTCGGGCGATATCGCTCTCAACGTGCTGTGGCCGAAG
GGAGCCCCCTGGAGCACCGCCGACAACGACAACAGCGTGGTGGTGCAGCTCGTCAGCCCGAAGTTCCGCACCGCCGTGCT
GGGCGACCTGCCCGACCCGGCCGAGACGCTTCTGGGACTCGGCCACCTCGACCTGCTCAAGGCGGCGCACCACGGCAGCC
GCTTCTCGACCGGCGAGGCGTTTCTGGCCGAAACCGGGCCGGGCAACGCGGTCATCAGCGTGGGGCGCAACACCTACGGG
CACCCGAACGACGACGTGTTGACCCGGCTGACAGCCCGGAACGTGAACATCTGGCGTACCGATCGGGTGGGCACGATCCG
GTGGCCGATTCCGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(517-591)

Competence protein (Competence)

(235-483)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.771

88.815

0.522