Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QYS50_RS10695 Genome accession   NZ_CP129415
Coordinates   2184444..2184818 (+) Length   124 a.a.
NCBI ID   WP_407569236.1    Uniprot ID   -
Organism   Deinococcus altitudinis strain LMG 24022     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2179444..2189818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS50_RS10675 (QYS50_10675) - 2179452..2180510 (-) 1059 WP_407571406.1 DUF2167 domain-containing protein -
  QYS50_RS10680 (QYS50_10680) fusA 2180667..2182760 (-) 2094 WP_407569235.1 elongation factor G -
  QYS50_RS10685 (QYS50_10685) rpsG 2183002..2183472 (-) 471 WP_407540438.1 30S ribosomal protein S7 -
  QYS50_RS10690 (QYS50_10690) rpsL 2183763..2184170 (-) 408 WP_407571407.1 30S ribosomal protein S12 -
  QYS50_RS10695 (QYS50_10695) comEA 2184444..2184818 (+) 375 WP_407569236.1 ComEA family DNA-binding protein Machinery gene
  QYS50_RS10700 (QYS50_10700) comEC 2184818..2187073 (+) 2256 WP_407569237.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QYS50_RS10705 (QYS50_10705) - 2187083..2187580 (+) 498 WP_407569238.1 hypothetical protein -
  QYS50_RS10710 (QYS50_10710) nrdR 2187582..2188028 (-) 447 WP_407569239.1 transcriptional regulator NrdR -
  QYS50_RS10715 (QYS50_10715) - 2188035..2188811 (-) 777 WP_407569240.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 12792.93 Da        Isoelectric Point: 5.7632

>NTDB_id=853121 QYS50_RS10695 WP_407569236.1 2184444..2184818(+) (comEA) [Deinococcus altitudinis strain LMG 24022]
MQADSSSRLSAGLLAAALACGLWALWPLAFPAPRVPTVAHAELPLAQVAAAPEYPATASITPLVSGQLNLNTATEEQLES
LPKIGPALAERLIAGRPYRSLADLDAVKGIGPSLMKALAPLVTF

Nucleotide


Download         Length: 375 bp        

>NTDB_id=853121 QYS50_RS10695 WP_407569236.1 2184444..2184818(+) (comEA) [Deinococcus altitudinis strain LMG 24022]
ATGCAGGCAGACTCCTCCTCCAGACTGAGCGCGGGCCTGCTGGCGGCCGCCCTAGCCTGCGGGCTGTGGGCGCTCTGGCC
GTTGGCGTTTCCGGCTCCGCGCGTCCCCACGGTGGCCCACGCCGAGCTGCCGCTGGCCCAGGTGGCCGCCGCGCCGGAGT
ATCCGGCCACCGCCAGCATCACGCCGCTCGTTTCCGGCCAGCTGAACCTGAATACGGCCACCGAAGAACAGCTCGAAAGC
CTGCCGAAGATCGGCCCGGCCCTGGCCGAGCGCCTGATCGCAGGGCGGCCCTACCGGAGCCTCGCCGACCTCGACGCGGT
GAAGGGCATAGGCCCCAGCCTGATGAAGGCGCTCGCGCCGCTGGTCACGTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(67-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.783

92.742

0.508