Detailed information NTG0853125

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: QYS50_RS12235
• Genome accession: NZ_CP129415
• Coordinates: 2517996..2520662 (+)
• Length: 888 a.a.
• NCBI ID: WP_407569511.1
• Uniprot ID: -
• Organism: Deinococcus altitudinis strain LMG 24022
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2512996..2525662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYS50_RS12210 (QYS50_12205)	-	2514035..2514703 (+)	669	WP_407540813.1	response regulator transcription factor	-
QYS50_RS12215 (QYS50_12210)	-	2514875..2515498 (+)	624	WP_407569507.1	CAP domain-containing protein	-
QYS50_RS12220 (QYS50_12215)	-	2515547..2516284 (-)	738	WP_407569508.1	metallophosphoesterase family protein	-
QYS50_RS12225 (QYS50_12220)	-	2516456..2517274 (+)	819	WP_407569509.1	polyphenol oxidase family protein	-
QYS50_RS12230 (QYS50_12225)	-	2517271..2517996 (+)	726	WP_407569510.1	YqeG family HAD IIIA-type phosphatase	-
QYS50_RS12235 (QYS50_12230)	pilB	2517996..2520662 (+)	2667	WP_407569511.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
QYS50_RS12240 (QYS50_12235)	pilT	2520805..2521995 (+)	1191	WP_407569512.1	type IV pilus twitching motility protein PilT	Machinery gene
QYS50_RS12245 (QYS50_12240)	-	2522116..2522331 (+)	216	WP_407569513.1	hypothetical protein	-
QYS50_RS12250 (QYS50_12245)	-	2522601..2523551 (+)	951	WP_407569514.1	GNAT family N-acetyltransferase	-
QYS50_RS12255 (QYS50_12250)	-	2523535..2524233 (-)	699	WP_407569515.1	DsbA family protein	-
QYS50_RS12260 (QYS50_12255)	-	2524524..2524835 (-)	312	WP_407569516.1	hypothetical protein	-
QYS50_RS12265 (QYS50_12260)	-	2524922..2525584 (+)	663	WP_407569517.1	trimeric intracellular cation channel family protein	-

Sequence

Protein

• Length: 888 a.a.
• Molecular weight: 97023.33 Da
• Isoelectric Point: 5.0726

>NTDB_id=853125 QYS50_RS12235 WP_407569511.1 2517996..2520662(+) (pilB) [Deinococcus altitudinis strain LMG 24022]
MALSIGDRRLGAILLEQGYVNDLDLQKALNKHAEVGGRLADILIDGGMVGEKRIARAVEEALGIPLVNLTVLQPDPQALK
AVKAQVALSALAFPFALEGDTLRVAFVDPLNNLNLETVEDASGLNVELYQALREQVQWAIASNYPELGLNANMPLEPQDG
TVSLLGQRLVSRGLVTEAALLETLEQQKQSGEPLGSLLISLKLLTEEQLYETLAEQSGTVFVRNPRDYEPAEEVLGMLLR
ADALRLSAVPIEEKEGSVTVVGSDPRRLSDIEALVGKPVHLMLGRPNDVEALIDRCYPQRGRLGEAMVQQGSLSRAQLRE
ALQVQARTGKVKPLGEVIVDLGFAGSEEIDAALQKQTSGGGRLEDTLVQSGKLSPEMLARSLAAQLGYEFLDPVQNPPDP
KVALLIPESTARRYVVVPMRLQGNSLVVAMKDPRNVFALDDLRLLTGRDIVPAVMAEKDIVRLIERYFGSQDMVKLNEEL
VRDSRGRDKEREAQQDQTNLDDNAVVRVVDSIIREAALQEASDIHIEPGEFSMKVRYRIDGTLREHMELPKGSAQSVLAR
IKILGQLDIAERRVPQDGRVRFKKGSIDLDLRLSTLPTVYGEKAVMRLLQKASNIPEVEQLGLSEHNFQRFTDLIEKPNG
IFLITGPTGSGKSFSSFSILKRIARPEKNTTTIEDPVEYEIPGINQSQVNPVAGMTFARALRAFLRQDPDIIFVGEIRDA
ETAKIATEAALTGHLVLATLHTNDAPGAVTRLEEMGVEHFNIGAALIGVLGQRLVRKVCPECKTPTNADPDVLRRLGITE
KELKGANLVRGAGCPRCGGTGYKGRMGIHELMIIDDHLRRGIGKGEGANELRDIATTQSGMKTLRQDGIEKAMQGVTTLE
EVLAVTSI

Nucleotide

• Length: 2667 bp

>NTDB_id=853125 QYS50_RS12235 WP_407569511.1 2517996..2520662(+) (pilB) [Deinococcus altitudinis strain LMG 24022]
ATGGCACTTTCGATTGGAGACCGGCGGCTGGGAGCGATCCTGCTGGAACAGGGCTATGTCAACGACCTCGATCTGCAGAA
GGCGCTCAACAAGCACGCCGAGGTGGGCGGCCGTCTGGCCGACATCCTAATCGACGGCGGCATGGTGGGCGAGAAGCGGA
TCGCGCGCGCCGTCGAGGAAGCGCTGGGCATTCCGCTCGTGAACCTGACGGTGCTCCAGCCGGACCCCCAGGCGCTGAAG
GCCGTCAAGGCGCAGGTGGCGCTCTCGGCGCTGGCCTTCCCCTTCGCGCTGGAGGGCGACACCCTGCGGGTGGCCTTCGT
CGATCCGCTCAACAACCTGAACCTCGAGACCGTGGAAGACGCCAGCGGCCTGAACGTCGAGCTGTATCAGGCGCTGCGCG
AGCAGGTGCAGTGGGCGATTGCCAGCAACTATCCGGAACTGGGCCTGAACGCCAACATGCCGCTGGAACCGCAGGACGGC
ACGGTGTCGCTGCTCGGCCAGCGGCTGGTGTCGCGCGGCCTGGTGACCGAGGCGGCGCTGCTGGAAACGCTCGAACAGCA
GAAACAGAGCGGTGAACCGCTGGGGTCGCTGCTGATCAGCCTGAAACTGCTCACCGAAGAGCAGCTGTACGAGACGCTGG
CCGAGCAGTCGGGGACCGTCTTCGTGCGCAACCCGCGCGACTACGAGCCCGCCGAGGAGGTGCTCGGCATGCTGCTGCGC
GCCGACGCGCTGCGGCTGTCGGCCGTGCCCATTGAGGAAAAGGAAGGCAGCGTGACGGTGGTGGGCAGCGACCCGCGCCG
CCTGAGCGACATCGAGGCGCTGGTGGGCAAACCTGTTCACCTGATGCTCGGCCGTCCCAACGACGTCGAGGCCCTGATCG
ACCGCTGTTACCCGCAGCGCGGGCGGCTGGGCGAGGCGATGGTGCAGCAGGGGTCGCTGTCACGCGCCCAGCTGAGAGAG
GCGCTCCAGGTGCAGGCGCGCACCGGCAAGGTCAAGCCGCTCGGTGAGGTGATCGTCGATCTGGGCTTCGCCGGCAGCGA
GGAGATCGACGCCGCGCTCCAGAAGCAGACCTCCGGCGGCGGACGGCTGGAAGACACGCTGGTGCAGTCGGGCAAGCTCA
GCCCCGAGATGCTGGCGCGCAGCCTCGCGGCCCAGCTCGGCTACGAATTCCTCGACCCGGTTCAGAATCCACCCGACCCC
AAGGTGGCCCTGCTGATTCCCGAGAGCACCGCCCGCCGCTACGTGGTGGTTCCCATGCGGCTGCAGGGCAACTCGCTGGT
GGTCGCCATGAAGGACCCGCGCAACGTGTTCGCGCTCGACGATCTGCGGCTGCTGACCGGCCGCGACATCGTGCCGGCGG
TGATGGCCGAGAAAGACATCGTGCGCCTGATCGAGCGGTATTTCGGCTCACAGGACATGGTGAAGCTGAACGAGGAGCTG
GTGCGCGACAGCCGGGGCCGCGACAAGGAGCGCGAGGCCCAGCAGGACCAGACCAACCTCGACGACAACGCGGTGGTGCG
GGTGGTGGACAGCATCATCAGAGAAGCGGCGCTTCAGGAGGCCAGCGACATTCACATCGAGCCGGGCGAGTTCAGCATGA
AGGTGCGTTACCGAATCGACGGCACGCTGCGCGAGCACATGGAGCTGCCCAAAGGTTCGGCCCAAAGCGTGCTGGCACGC
ATCAAGATTCTCGGCCAGCTCGACATCGCCGAGCGCCGGGTGCCGCAGGACGGCCGCGTGCGCTTCAAGAAGGGCAGCAT
CGACCTCGACCTGCGACTGAGTACCTTGCCCACCGTGTATGGCGAGAAGGCCGTGATGCGCCTGTTGCAGAAGGCCAGCA
ACATTCCTGAAGTCGAGCAGCTCGGCCTGAGCGAACACAACTTCCAGCGCTTCACCGACCTGATCGAGAAGCCCAACGGC
ATCTTCCTGATCACCGGACCGACCGGCTCGGGCAAGTCGTTCAGCTCCTTTTCCATCCTGAAGCGCATCGCCAGGCCCGA
GAAGAACACCACCACCATCGAGGACCCGGTCGAGTACGAGATTCCCGGCATCAACCAGTCGCAGGTGAACCCGGTGGCGG
GCATGACGTTCGCCCGCGCCCTGAGAGCCTTCCTGCGGCAAGACCCCGACATCATCTTCGTCGGCGAGATCCGGGACGCC
GAAACCGCCAAGATCGCCACCGAGGCGGCCCTCACCGGCCACCTGGTGCTCGCCACGCTGCACACCAACGACGCGCCCGG
CGCCGTGACCCGTCTGGAGGAAATGGGCGTGGAGCATTTCAACATCGGCGCGGCACTGATCGGGGTGCTGGGACAGCGGC
TGGTGCGCAAGGTCTGCCCGGAATGCAAGACCCCGACCAACGCCGACCCCGACGTGCTGCGGCGGCTGGGCATCACCGAG
AAGGAACTGAAGGGCGCCAACCTGGTGCGCGGCGCCGGCTGCCCTCGCTGCGGCGGCACCGGCTACAAGGGCCGGATGGG
CATTCACGAGCTGATGATCATCGACGACCACCTGCGGCGCGGCATCGGCAAGGGCGAGGGAGCCAACGAACTGCGCGACA
TCGCCACCACCCAGAGCGGCATGAAGACGCTGCGCCAGGACGGCATCGAGAAGGCCATGCAGGGCGTCACCACGCTGGAA
GAAGTGCTGGCCGTCACCAGCATCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (198-301)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (367-472)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (43-145)

• Type II/IV secretion system protein (T2SSE) (512-777)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	72.921	100	0.731
pilF	Thermus thermophilus HB27	55.556	100	0.557