Detailed information NTG0853127

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QYS50_RS13400
• Genome accession: NZ_CP129415
• Coordinates: 2784148..2785302 (+)
• Length: 384 a.a.
• NCBI ID: WP_407569723.1
• Uniprot ID: -
• Organism: Deinococcus altitudinis strain LMG 24022
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2779148..2790302

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYS50_RS13375 (QYS50_13370)	-	2779904..2780911 (+)	1008	WP_407569720.1	GNAT family N-acetyltransferase	-
QYS50_RS13380 (QYS50_13375)	-	2781017..2782087 (+)	1071	WP_407569721.1	GNAT family N-acetyltransferase	-
QYS50_RS13385 (QYS50_13380)	-	2782084..2783100 (+)	1017	WP_407569722.1	GNAT family N-acetyltransferase	-
QYS50_RS13390	-	2783097..2783504 (+)	408	Protein_2617	GNAT family N-acetyltransferase	-
QYS50_RS13395	-	2783499..2784122 (+)	624	WP_407571423.1	GNAT family N-acetyltransferase	-
QYS50_RS13400 (QYS50_13390)	pilD	2784148..2785302 (+)	1155	WP_407569723.1	prepilin peptidase	Machinery gene
QYS50_RS13405 (QYS50_13395)	-	2785357..2785503 (+)	147	WP_407569724.1	hypothetical protein	-
QYS50_RS13410 (QYS50_13400)	-	2785575..2786561 (-)	987	WP_407569725.1	malate dehydrogenase	-
QYS50_RS13415 (QYS50_13405)	-	2786741..2788006 (-)	1266	WP_407569726.1	esterase-like activity of phytase family protein	-
QYS50_RS13420 (QYS50_13410)	rplS	2788308..2788835 (-)	528	WP_407571424.1	50S ribosomal protein L19	-
QYS50_RS13425 (QYS50_13415)	-	2789058..2790011 (+)	954	WP_407569727.1	hypothetical protein	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 40505.09 Da
• Isoelectric Point: 6.2352

>NTDB_id=853127 QYS50_RS13400 WP_407569723.1 2784148..2785302(+) (pilD) [Deinococcus altitudinis strain LMG 24022]
MIPDVLITVFAAVLGLLIGSFSNVLIWRLPRHESVNFPPSHCPNCDHALAPIDLVPVLSWAMLGGKCRYCKAPISPRYPI
VELITGAGYALLSVVFPYSQVGASLLGLCLLFTLLLVASVIDQETYTIPDEISLPGAAIGLLFGLVNARSGAADTTGLPV
FAEALRGMLLGAGLLIAIDLLGSWVIRRFRERAFPEFPLGYQQIALSLLAGAWLGAGWGVGVGVLSAAANLLGRRTFRVP
EWLTLGGTLLSLVLTGTGAGPGLILMVQGALAAAGGMALLCGLYWWLSPLITKTPEDDSDDYDASAMGFGDVKLAALIGA
FLGWEKLIVAVVFAVVAGAVLGVLQLLIFKENRLKFGPYLAIGAVLALLFGSQLVQMYRGLFGL

Nucleotide

• Length: 1155 bp

>NTDB_id=853127 QYS50_RS13400 WP_407569723.1 2784148..2785302(+) (pilD) [Deinococcus altitudinis strain LMG 24022]
GTGATTCCAGACGTGCTCATCACCGTGTTCGCCGCCGTGCTGGGGCTCCTGATCGGCTCGTTCTCCAACGTGCTGATCTG
GCGGCTGCCCCGGCACGAGAGCGTCAATTTTCCGCCCTCGCACTGCCCGAACTGCGACCATGCGCTCGCCCCGATCGACC
TGGTGCCGGTGCTGTCGTGGGCCATGCTGGGCGGCAAGTGCCGCTACTGCAAGGCCCCGATCAGCCCGCGCTACCCCATC
GTCGAGCTGATCACCGGGGCCGGGTACGCGCTGCTGAGCGTGGTGTTTCCGTACTCGCAGGTGGGGGCCAGCCTGCTCGG
GCTGTGCCTGCTGTTCACGCTGCTGCTGGTGGCCTCGGTCATCGACCAGGAGACCTACACCATTCCCGACGAGATCTCGC
TGCCGGGCGCGGCCATCGGGCTGCTGTTCGGACTGGTGAACGCCCGGTCAGGGGCGGCGGACACGACTGGGCTGCCGGTC
TTTGCCGAGGCCCTGCGCGGCATGTTGCTGGGCGCGGGCCTGCTGATCGCCATCGACCTGCTGGGCTCGTGGGTGATCCG
GCGCTTCCGTGAACGCGCCTTCCCGGAGTTTCCGCTGGGCTACCAGCAGATCGCGCTGTCGCTGCTGGCGGGCGCGTGGC
TGGGGGCGGGGTGGGGCGTCGGGGTGGGCGTGCTGAGTGCGGCCGCCAACCTGCTGGGCCGCCGCACCTTCCGCGTTCCG
GAATGGCTGACGCTCGGCGGCACGTTGCTCAGTCTGGTGCTCACGGGCACGGGCGCCGGGCCGGGCCTGATCCTGATGGT
GCAGGGCGCCCTGGCCGCCGCCGGAGGCATGGCGCTGCTGTGCGGGCTGTACTGGTGGCTGAGCCCGCTCATCACAAAGA
CGCCCGAAGACGACAGCGACGACTACGACGCCAGCGCCATGGGCTTCGGCGACGTGAAGCTCGCGGCTTTGATCGGCGCG
TTCCTGGGCTGGGAAAAGCTGATCGTGGCCGTGGTGTTCGCGGTGGTGGCGGGCGCGGTGCTGGGCGTGCTGCAACTGCT
GATCTTCAAGGAGAACCGCCTGAAGTTCGGCCCGTACCTGGCAATCGGAGCGGTGCTGGCGCTGCTGTTCGGCAGCCAGC
TGGTGCAGATGTACAGGGGGCTGTTCGGCCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (235-343)

• Type IV leader peptidase family (Peptidase_A24) (110-224)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-95)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.794	100	0.604