Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   QYS50_RS10960 Genome accession   NZ_CP129415
Coordinates   2249842..2250294 (-) Length   150 a.a.
NCBI ID   WP_407569284.1    Uniprot ID   -
Organism   Deinococcus altitudinis strain LMG 24022     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2244842..2255294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS50_RS10945 (QYS50_10945) - 2244925..2246664 (+) 1740 WP_407569281.1 S8 family serine peptidase -
  QYS50_RS10950 (QYS50_10950) - 2246767..2247909 (+) 1143 WP_407569282.1 LCP family protein -
  QYS50_RS10955 (QYS50_10955) - 2247981..2249645 (+) 1665 WP_407569283.1 alpha-amylase family glycosyl hydrolase -
  QYS50_RS10960 (QYS50_10960) ddrB 2249842..2250294 (-) 453 WP_407569284.1 single-stranded DNA-binding protein Machinery gene
  QYS50_RS10965 (QYS50_10965) - 2250488..2251414 (-) 927 WP_407569285.1 glycoside hydrolase family 43 protein -
  QYS50_RS10970 (QYS50_10970) ychF 2251631..2252728 (-) 1098 WP_407569286.1 redox-regulated ATPase YchF -
  QYS50_RS10975 (QYS50_10975) rpmB 2253037..2253258 (+) 222 WP_407569287.1 50S ribosomal protein L28 -
  QYS50_RS10980 (QYS50_10980) lspA 2253355..2253921 (-) 567 WP_407569288.1 signal peptidase II -
  QYS50_RS10985 (QYS50_10985) - 2254043..2254510 (+) 468 WP_407569289.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16335.57 Da        Isoelectric Point: 8.3241

>NTDB_id=853123 QYS50_RS10960 WP_407569284.1 2249842..2250294(-) (ddrB) [Deinococcus altitudinis strain LMG 24022]
MPILNLTGPLGTSISVDVPEERDLLGVLRRYGRQGWTSGEIPAGGLSLPLAMADNFDWSLIGARAYTSPDGEQAVIYKGQ
SYKRRELDEVDTKKIKLPKIVKYSRGARPTDPVHLKEGEEGGVQYVTLISFRGGGRVIEAYVDASATANK

Nucleotide


Download         Length: 453 bp        

>NTDB_id=853123 QYS50_RS10960 WP_407569284.1 2249842..2250294(-) (ddrB) [Deinococcus altitudinis strain LMG 24022]
ATGCCCATATTGAACCTGACCGGCCCCCTGGGAACAAGCATCAGCGTCGATGTTCCCGAAGAACGCGATCTGCTGGGCGT
ACTGCGCCGCTACGGCCGCCAGGGCTGGACCAGCGGCGAGATTCCGGCCGGTGGCCTGAGCCTGCCGCTCGCCATGGCCG
ACAACTTCGACTGGTCGCTGATCGGTGCGCGGGCCTACACCAGCCCGGACGGCGAGCAGGCGGTGATCTACAAGGGCCAG
AGCTACAAGCGCCGCGAACTCGACGAGGTCGACACCAAGAAGATCAAGCTGCCGAAAATCGTGAAGTACAGCCGGGGCGC
GCGGCCCACCGACCCGGTGCACCTCAAGGAAGGCGAAGAGGGCGGCGTGCAGTACGTGACGCTCATCAGTTTCCGGGGCG
GTGGACGCGTGATCGAAGCCTACGTGGACGCCTCCGCCACCGCCAACAAATAA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(6-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.993

99.333

0.487