Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GSVR_RS21155 Genome accession   NZ_AP024469
Coordinates   4543316..4543735 (+) Length   139 a.a.
NCBI ID   WP_173197604.1    Uniprot ID   -
Organism   Geobacter sp. SVR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4538316..4548735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSVR_RS21135 (GSVR_42520) - 4539046..4539597 (-) 552 WP_173197596.1 histidine phosphatase family protein -
  GSVR_RS21140 (GSVR_42530) - 4539743..4541353 (-) 1611 WP_173197598.1 GH3 auxin-responsive promoter family protein -
  GSVR_RS21145 (GSVR_42540) - 4541354..4542430 (-) 1077 WP_173197600.1 alpha/beta hydrolase -
  GSVR_RS21150 (GSVR_42550) sixA 4542522..4543034 (-) 513 WP_173197602.1 phosphohistidine phosphatase SixA -
  GSVR_RS21155 (GSVR_42560) ssb 4543316..4543735 (+) 420 WP_173197604.1 single-stranded DNA-binding protein Machinery gene
  GSVR_RS21160 (GSVR_42570) - 4544021..4544956 (+) 936 WP_173197606.1 glycine zipper family protein -
  GSVR_RS21165 (GSVR_42580) - 4545026..4545364 (+) 339 WP_173197608.1 hypothetical protein -
  GSVR_RS21170 (GSVR_42590) - 4545537..4547240 (+) 1704 WP_305040958.1 ABC transporter ATP-binding protein -
  GSVR_RS21175 (GSVR_42600) - 4547341..4548519 (-) 1179 WP_305040939.1 BamA/TamA family outer membrane protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15446.19 Da        Isoelectric Point: 5.3042

>NTDB_id=85269 GSVR_RS21155 WP_173197604.1 4543316..4543735(+) (ssb) [Geobacter sp. SVR]
MASLNKVMLIGNLGKDPEVRYTASGQAVAGFSLATSEKFKSKSGDWEERTEWHNITLWGKLAEIAGEYLSKGKTVYIEGR
LQTRKWQDKSGNDRYTTEIVGDKMQMLSGKGERRSETSSAPSAGGSYDEPPFQDDDIPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=85269 GSVR_RS21155 WP_173197604.1 4543316..4543735(+) (ssb) [Geobacter sp. SVR]
ATGGCAAGTCTTAACAAAGTCATGTTGATCGGAAATCTCGGCAAGGATCCGGAAGTGCGCTACACCGCCTCGGGACAAGC
CGTAGCAGGTTTTTCACTCGCCACCAGCGAGAAGTTCAAAAGCAAGTCAGGTGACTGGGAGGAGCGCACCGAGTGGCACA
ACATCACTCTGTGGGGCAAACTGGCGGAGATTGCCGGCGAATATCTCTCCAAGGGCAAGACGGTCTACATCGAGGGGCGC
CTGCAGACCCGCAAGTGGCAGGACAAAAGCGGCAACGACCGCTACACGACCGAGATCGTCGGCGACAAGATGCAGATGCT
CTCCGGCAAAGGGGAACGGCGCAGCGAGACCTCTTCCGCTCCTTCAGCCGGCGGCAGTTACGACGAGCCCCCCTTCCAGG
ACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.619

100

0.633
  ssb Neisseria gonorrhoeae MS11

55.118

91.367

0.504
  ssb Neisseria meningitidis MC58

54.331

91.367

0.496
  ssb Glaesserella parasuis strain SC1401

54.955

79.856

0.439
  ssb Latilactobacillus sakei subsp. sakei 23K

30.994

100

0.381

Multiple sequence alignment