Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QWY21_RS19415 Genome accession   NZ_CP129236
Coordinates   3996537..3997019 (-) Length   160 a.a.
NCBI ID   WP_300986616.1    Uniprot ID   -
Organism   Planococcus sp. N022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3991537..4002019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY21_RS19395 (QWY21_19395) rplI 3992694..3993143 (-) 450 WP_300986613.1 50S ribosomal protein L9 -
  QWY21_RS19400 (QWY21_19400) - 3993140..3995116 (-) 1977 WP_300986614.1 DHH family phosphoesterase -
  QWY21_RS19405 (QWY21_19405) - 3995131..3996090 (-) 960 WP_300986615.1 YybS family protein -
  QWY21_RS19410 (QWY21_19410) rpsR 3996247..3996483 (-) 237 WP_106533341.1 30S ribosomal protein S18 -
  QWY21_RS19415 (QWY21_19415) ssbA 3996537..3997019 (-) 483 WP_300986616.1 single-stranded DNA-binding protein Machinery gene
  QWY21_RS19420 (QWY21_19420) rpsF 3997069..3997356 (-) 288 WP_106533339.1 30S ribosomal protein S6 -
  QWY21_RS19425 (QWY21_19425) - 3997532..3998092 (+) 561 WP_300986617.1 DUF3267 domain-containing protein -
  QWY21_RS19430 (QWY21_19430) - 3998103..3998486 (-) 384 WP_300986618.1 gamma-glutamylcyclotransferase -
  QWY21_RS19435 (QWY21_19435) ychF 3998646..3999746 (-) 1101 WP_300986619.1 redox-regulated ATPase YchF -
  QWY21_RS19440 (QWY21_19440) - 3999831..4000031 (-) 201 WP_300986620.1 DUF951 domain-containing protein -
  QWY21_RS19445 (QWY21_19445) - 4000074..4000982 (-) 909 WP_300986621.1 mechanosensitive ion channel family protein -
  QWY21_RS19450 (QWY21_19450) - 4001007..4001720 (-) 714 WP_300986622.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17413.07 Da        Isoelectric Point: 4.7621

>NTDB_id=851774 QWY21_RS19415 WP_300986616.1 3996537..3997019(-) (ssbA) [Planococcus sp. N022]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEKETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSSGAGADRSQGQPSYQQNQSPSPSPSQQNYTRVDEDPFSSGSGPIEVSDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=851774 QWY21_RS19415 WP_300986616.1 3996537..3997019(-) (ssbA) [Planococcus sp. N022]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCTGATCTTCGTTACACTCCAAGCGGGGCGGCGGTTGC
ACGTTTTACACTAGCTGTAAACCGGACATTCTCCAACGCGCAAGGTGAAAAAGAAACGGATTTCATCAATTGTACTGTTT
GGCGCAAACAAGCTGAAAACACAGCAAACTTCTTGAAAAAAGGAAGCTTGGCTGGCGTAGAAGGCCGCATTCAAACTGGA
AGCTACGAGGGACAAGACGGAAAACGTGTTTATACGACTGAAGTAGTAGCAGACAGCGTTCAATTCCTTGAACCAAAAAG
CTCTGGTGCTGGTGCAGATCGTTCACAAGGACAACCGTCCTATCAGCAGAACCAATCGCCAAGCCCAAGTCCAAGTCAGC
AAAACTATACGCGTGTAGACGAAGATCCGTTCTCAAGCGGCAGCGGTCCGATCGAAGTATCGGATGACGATTTGCCGTTC
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.302

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

55.814

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.487

70.625

0.463
  ssb Neisseria gonorrhoeae MS11

35.465

100

0.381
  ssb Vibrio cholerae strain A1552

32.778

100

0.369
  ssb Neisseria meningitidis MC58

33.721

100

0.363