Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QWY16_RS19235 Genome accession   NZ_CP129235
Coordinates   3963401..3963886 (-) Length   161 a.a.
NCBI ID   WP_300990845.1    Uniprot ID   -
Organism   Planococcus sp. N016     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3958401..3968886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY16_RS19215 (QWY16_19215) rplI 3959402..3959851 (-) 450 WP_300990841.1 50S ribosomal protein L9 -
  QWY16_RS19220 (QWY16_19220) - 3959848..3961824 (-) 1977 WP_300990842.1 DHH family phosphoesterase -
  QWY16_RS19225 (QWY16_19225) - 3961839..3962789 (-) 951 WP_300990843.1 YybS family protein -
  QWY16_RS19230 (QWY16_19230) rpsR 3963108..3963344 (-) 237 WP_300990844.1 30S ribosomal protein S18 -
  QWY16_RS19235 (QWY16_19235) ssbA 3963401..3963886 (-) 486 WP_300990845.1 single-stranded DNA-binding protein Machinery gene
  QWY16_RS19240 (QWY16_19240) rpsF 3963937..3964224 (-) 288 WP_106533339.1 30S ribosomal protein S6 -
  QWY16_RS19245 (QWY16_19245) - 3964400..3964960 (+) 561 WP_300990846.1 DUF3267 domain-containing protein -
  QWY16_RS19250 (QWY16_19250) - 3964991..3965368 (-) 378 WP_300990847.1 gamma-glutamylcyclotransferase -
  QWY16_RS19255 (QWY16_19255) - 3965494..3965844 (-) 351 WP_300990848.1 hypothetical protein -
  QWY16_RS19260 (QWY16_19260) ychF 3965947..3967047 (-) 1101 WP_300993542.1 redox-regulated ATPase YchF -
  QWY16_RS19265 (QWY16_19265) - 3967204..3967404 (-) 201 WP_300990849.1 DUF951 domain-containing protein -
  QWY16_RS19270 (QWY16_19270) - 3967421..3968257 (-) 837 WP_300993544.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17625.28 Da        Isoelectric Point: 4.9327

>NTDB_id=851736 QWY16_RS19235 WP_300990845.1 3963401..3963886(-) (ssbA) [Planococcus sp. N016]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEKETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKNSGANANADRSQGQQPSYQQNQSPSPSQQNYTRVDQDPFSSGSGPIEVSDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=851736 QWY16_RS19235 WP_300990845.1 3963401..3963886(-) (ssbA) [Planococcus sp. N016]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCGGATCTTCGCTATACCCCAAGCGGTGCGGCAGTTGC
CCGTTTTACACTGGCTGTAAACCGGACATTCTCCAATGCGCAAGGTGAGAAAGAAACGGATTTTATCAATTGTACTGTTT
GGCGCAAACAAGCTGAAAACACAGCGAACTTCTTGAAAAAAGGAAGCCTGGCTGGCGTTGAAGGCCGCATTCAAACTGGA
AGCTACGAAGGGCAGGATGGAAAACGCGTCTATACGACTGAAGTTGTGGCTGACAGCGTCCAATTTCTTGAGCCGAAAAA
CTCTGGAGCTAATGCTAATGCAGACCGTTCACAAGGCCAACAGCCATCCTATCAGCAGAACCAATCGCCGAGCCCAAGTC
AGCAAAATTATACACGTGTAGACCAGGATCCATTCTCAAGCGGCAGCGGCCCGATCGAAGTATCGGATGACGATTTGCCG
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.465

100

0.646
  ssb Latilactobacillus sakei subsp. sakei 23K

52.601

100

0.565
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.925

65.839

0.447
  ssb Neisseria gonorrhoeae MS11

35.838

100

0.385
  ssb Vibrio cholerae strain A1552

33.889

100

0.379
  ssb Neisseria meningitidis MC58

35.26

100

0.379