Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLD17_RS06525 Genome accession   NZ_CP129182
Coordinates   1112210..1112860 (-) Length   216 a.a.
NCBI ID   WP_081196668.1    Uniprot ID   -
Organism   Lactococcus cremoris strain D.1.7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1107210..1117860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLD17_RS06495 (LLD17_06515) - 1107401..1108933 (+) 1533 WP_081196670.1 Nramp family divalent metal transporter -
  LLD17_RS06500 (LLD17_06520) - 1109007..1109975 (+) 969 WP_021165232.1 PhoH family protein -
  LLD17_RS06505 (LLD17_06525) - 1110045..1110539 (+) 495 WP_011676092.1 NUDIX hydrolase -
  LLD17_RS06510 (LLD17_06530) ybeY 1110630..1111118 (+) 489 WP_081196669.1 rRNA maturation RNase YbeY -
  LLD17_RS06515 (LLD17_06535) - 1111102..1111557 (+) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLD17_RS06520 (LLD17_06540) - 1111574..1112152 (+) 579 WP_011676095.1 nucleotidyltransferase family protein -
  LLD17_RS06525 (LLD17_06545) comFC 1112210..1112860 (-) 651 WP_081196668.1 ComF family protein Machinery gene
  LLD17_RS06530 - 1112860..1114154 (-) 1295 Protein_1121 helicase-related protein -
  LLD17_RS06535 (LLD17_06560) - 1114211..1114846 (+) 636 WP_011676097.1 YigZ family protein -
  LLD17_RS06540 (LLD17_06565) - 1114888..1115388 (+) 501 WP_081196667.1 VanZ family protein -
  LLD17_RS06545 (LLD17_06570) - 1115454..1116473 (+) 1020 WP_032951092.1 DUF475 domain-containing protein -
  LLD17_RS06550 (LLD17_06575) - 1116582..1117349 (+) 768 WP_011676099.1 5'-nucleotidase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25211.44 Da        Isoelectric Point: 9.7536

>NTDB_id=851386 LLD17_RS06525 WP_081196668.1 1112210..1112860(-) (comFC) [Lactococcus cremoris strain D.1.7]
MQTCLLCSRIIKQTLTFSEFFLLKNNRNLICNKCQSLFKKIPNERCPRCSKSNSKGICADCLKWEEKGIIVNHQSIFIYN
QAMKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRAYLDLLEKEDTVRQSSLNHE
GRLSTSNPFKLKEGEKIPQKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=851386 LLD17_RS06525 WP_081196668.1 1112210..1112860(-) (comFC) [Lactococcus cremoris strain D.1.7]
ATGCAAACTTGTCTGCTTTGTTCCAGAATTATCAAACAAACACTCACTTTTAGTGAATTCTTTTTACTAAAGAATAACAG
AAATTTAATATGCAATAAATGCCAATCACTGTTTAAAAAAATTCCTAACGAACGTTGTCCTCGTTGCTCTAAATCTAACT
CTAAAGGTATATGTGCTGACTGTCTCAAGTGGGAAGAAAAAGGAATCATTGTTAATCATCAGTCAATTTTTATTTATAAC
CAAGCAATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAA
AAATTTGTCCAAAAAAATTCCTCTGGTTCCCATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGTTTTAACCAAGTAA
CAGCTTTTCTAAAAGATAGAGCTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGACAATCAAGTCTTAATCACGAG
GGACGTCTATCAACTAGCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCCAAAAAATCATTTTGATTGATGATAT
TTATACAACTGGAACTACTTTTTATCATGCAATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTTTCAC
TCTGCCGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

97.761

62.037

0.606
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

100

0.495
  comFC/cflB Streptococcus pneumoniae Rx1

46.789

100

0.472
  comFC/cflB Streptococcus pneumoniae D39

46.789

100

0.472
  comFC/cflB Streptococcus pneumoniae R6

46.789

100

0.472
  comFC/cflB Streptococcus pneumoniae TIGR4

46.789

100

0.472
  comFC/cflB Streptococcus mitis SK321

46.789

100

0.472
  comFC Bacillus subtilis subsp. subtilis str. 168

34.802

100

0.366