Detailed information NTG0850802

Bioinformatically predicted

Overview

• Name: comGB
• Type: Machinery gene
• Locus tag: LLUC310_RS11675
• Genome accession: NZ_CP129094
• Coordinates: 2134758..2135783 (-)
• Length: 341 a.a.
• NCBI ID: WP_282675955.1
• Uniprot ID: -
• Organism: Lactococcus cremoris strain UC310
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2129758..2140783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLUC310_RS11630 (LLUC310_11710)	-	2129900..2130709 (-)	810	WP_011677177.1	metal ABC transporter permease	-
LLUC310_RS11635 (LLUC310_11715)	-	2130702..2131439 (-)	738	WP_011677178.1	metal ABC transporter ATP-binding protein	-
LLUC310_RS11640 (LLUC310_11720)	-	2131618..2132460 (-)	843	WP_011677179.1	metal ABC transporter solute-binding protein, Zn/Mn family	-
LLUC310_RS11645 (LLUC310_11725)	-	2132457..2132894 (-)	438	WP_011677180.1	zinc-dependent MarR family transcriptional regulator	-
LLUC310_RS11650 (LLUC310_11730)	comGG	2132974..2133336 (-)	363	WP_282675947.1	hypothetical protein	Machinery gene
LLUC310_RS11655 (LLUC310_11735)	comGF	2133296..2133742 (-)	447	WP_011836043.1	competence type IV pilus minor pilin ComGF	Machinery gene
LLUC310_RS11660 (LLUC310_11740)	comGE	2133705..2133941 (-)	237	WP_014573335.1	competence type IV pilus minor pilin ComGE	Machinery gene
LLUC310_RS11665 (LLUC310_11745)	comGD	2133973..2134161 (-)	189	WP_014573336.1	hypothetical protein	Machinery gene
LLUC310_RS11670 (LLUC310_11750)	comGC	2134363..2134740 (-)	378	Protein_2127	competence type IV pilus major pilin ComGC	-
LLUC310_RS11675 (LLUC310_11755)	comGB	2134758..2135783 (-)	1026	WP_282675955.1	competence type IV pilus assembly protein ComGB	Machinery gene
LLUC310_RS11680 (LLUC310_11760)	comGA	2135683..2136663 (-)	981	WP_162494683.1	competence type IV pilus ATPase ComGA	Machinery gene
LLUC310_RS11685 (LLUC310_11765)	-	2136778..2140560 (-)	3783	Protein_2130	PolC-type DNA polymerase III	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 38381.12 Da
• Isoelectric Point: 9.9840

>NTDB_id=850802 LLUC310_RS11675 WP_282675955.1 2134758..2135783(-) (comGB) [Lactococcus cremoris strain UC310]
MQTDILRLLRPKGKKLALIKQAKLIQLMGNLLNNGFHLGEVINFLALSKLVEKEFVFKMHQGLSSGNSLSEILDSLSCSK
NVVTQLALVEVHGNLVGTMQLVELHLKKQLKVKKKLIEVATYPVVLLVFLTGIMWGLKNYLLPQIDKGNNFATLLINHLP
LVFFSVGALIVLLTSLSIIIFKHLSALTNFTFLVKVPLVSSFIRLYLTAYFSREWGNLIAQGVELRQIIELMKKQKIRIF
AEVGIKLDLGLKAGQNFEQAVSHFSIFLPELSLMIEYGAIKDKLGLELSVYADECWEQFFSKIDRLMQLIQPLIFIFVAL
MIVLLYAAMSLPIYSNMGSGI

Nucleotide

• Length: 1026 bp

>NTDB_id=850802 LLUC310_RS11675 WP_282675955.1 2134758..2135783(-) (comGB) [Lactococcus cremoris strain UC310]
ATGCAAACGGACATCTTACGGCTATTGAGGCCGAAAGGGAAAAAATTAGCATTAATCAAGCAAGCAAAATTGATACAACT
GATGGGGAATCTTTTGAATAATGGTTTCCATTTGGGAGAAGTTATCAATTTTTTAGCTTTATCAAAATTAGTAGAAAAAG
AGTTTGTATTCAAAATGCACCAAGGTCTCAGTTCTGGAAATTCATTATCTGAAATTTTAGATAGTCTCTCTTGTTCTAAA
AATGTTGTGACACAACTTGCTTTGGTAGAAGTGCATGGGAATTTAGTAGGAACCATGCAATTGGTAGAACTGCATTTAAA
AAAGCAGCTTAAGGTCAAAAAGAAATTAATTGAAGTGGCAACTTATCCAGTTGTATTGTTGGTATTTCTCACTGGAATTA
TGTGGGGCTTGAAAAATTATTTATTACCTCAAATTGATAAGGGAAATAATTTTGCTACTTTATTAATTAATCATTTACCG
CTAGTATTTTTTTCTGTTGGTGCTTTAATCGTTTTACTGACAAGTTTATCAATAATAATATTCAAACATCTTTCAGCACT
CACTAATTTTACTTTTTTGGTTAAAGTTCCATTAGTAAGTTCTTTTATCCGCTTGTATTTGACCGCTTATTTCTCCAGAG
AATGGGGAAATTTAATTGCTCAAGGAGTTGAATTGCGACAAATAATAGAATTGATGAAAAAGCAGAAAATTCGCATTTTT
GCGGAAGTTGGAATTAAACTTGATTTGGGTTTGAAGGCTGGTCAGAATTTTGAGCAAGCTGTCAGTCATTTTTCGATTTT
TTTACCAGAACTTTCTTTGATGATTGAGTACGGCGCGATTAAAGATAAATTAGGGTTGGAGCTTTCTGTTTATGCTGATG
AATGTTGGGAACAATTCTTTTCTAAGATAGACCGTCTAATGCAATTAATACAACCCCTTATTTTTATTTTTGTTGCTTTG
ATGATTGTCTTATTGTATGCAGCGATGTCGTTACCCATTTATTCTAATATGGGTTCTGGAATTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (25-143)

• Type II secretion system (T2SS), protein F (T2SSF) (211-332)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGB	Lactococcus lactis subsp. cremoris KW2	97.361	100	0.974
comYB	Streptococcus gordonii str. Challis substr. CH1	51.039	98.827	0.504
comGB/cglB	Streptococcus pneumoniae D39	50.299	97.947	0.493
comGB/cglB	Streptococcus pneumoniae R6	50.299	97.947	0.493
comGB/cglB	Streptococcus pneumoniae Rx1	50.299	97.947	0.493
comGB/cglB	Streptococcus pneumoniae TIGR4	50.299	97.947	0.493
comGB/cglB	Streptococcus mitis SK321	50	97.947	0.49
comGB/cglB	Streptococcus mitis NCTC 12261	49.102	97.947	0.481
comYB	Streptococcus mutans UA140	50.955	92.082	0.469
comYB	Streptococcus mutans UA159	50.318	92.082	0.463