Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LBA42_RS10320 Genome accession   NZ_CP145437
Coordinates   2011456..2012244 (+) Length   262 a.a.
NCBI ID   WP_000940733.1    Uniprot ID   C1CSK2
Organism   Streptococcus pneumoniae strain HAC 39-1996     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2006456..2017244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBA42_RS10305 (LBA42_10305) - 2006684..2008000 (-) 1317 WP_000958927.1 FAD-containing oxidoreductase -
  LBA42_RS10310 (LBA42_10310) - 2008193..2009419 (+) 1227 WP_000841576.1 OFA family MFS transporter -
  LBA42_RS10315 (LBA42_10315) - 2009618..2011192 (+) 1575 WP_000671113.1 DEAD/DEAH box helicase -
  LBA42_RS10320 (LBA42_10320) codY 2011456..2012244 (+) 789 WP_000940733.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LBA42_RS10325 (LBA42_10325) - 2012244..2012819 (+) 576 WP_000158722.1 isochorismatase family cysteine hydrolase -
  LBA42_RS10335 (LBA42_10335) ugpC 2013269..2014399 (+) 1131 WP_000229961.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  LBA42_RS10340 (LBA42_10340) - 2014546..2014692 (-) 147 WP_000403100.1 hypothetical protein -
  LBA42_RS10345 (LBA42_10345) - 2014900..2015658 (+) 759 WP_001287230.1 class I SAM-dependent methyltransferase -
  LBA42_RS10350 (LBA42_10350) - 2015745..2016257 (+) 513 WP_001049323.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29756.15 Da        Isoelectric Point: 5.7806

>NTDB_id=850802 LBA42_RS10320 WP_000940733.1 2011456..2012244(+) (codY) [Streptococcus pneumoniae strain HAC 39-1996]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYV
QGANMIYETEANLPVEHDMSIFPVESRDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLVLVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=850802 LBA42_RS10320 WP_000940733.1 2011456..2012244(+) (codY) [Streptococcus pneumoniae strain HAC 39-1996]
ATGGCACATTTATTAGAAAAAACTAGAAAAATTACATCAATTTTGAAACGCTCAGAGGAGCAGTTGCAGGATGAGCTTCC
TTACAACGCTATTACGCGTCAGTTAGCGGATATTATTCATTGCAATGCCTGCATTATCAATAGTAAGGGACGTCTGCTTG
GCTATTTTATGCGTTATAAAACAAATACAGATCGCGTAGAGCAATTCTTCCAAACTAAGATTTTCCCAGATGACTACGTT
CAAGGGGCTAATATGATTTACGAAACAGAAGCAAACTTACCTGTTGAGCATGATATGAGTATTTTCCCTGTTGAGAGTAG
AGATGATTTTCCAGATGGCTTGACGACTATTGCACCGATTCATGTATCGGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GTAATGATAAAAAATTCGAAGATGAGGACTTGGTTCTTGTTGAGATTGCCAGTACCGTTGTTGGGATTCAGCTTCTTAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGTCGTCGTACTGCTGTCACCATGGCGGTCAATACCCTTTCTTACTCCGA
ACTCCGTGCTGTTTCAGCAATTTTAGGGGAATTAAATGGAAATGAAGGGAAGTTGACTGCGTCAGTGATTGCAGATCGTA
TCGGAATCACTCGCTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGGATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CSK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

48.374

93.893

0.454