Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LLUC310_RS11665 Genome accession   NZ_CP129094
Coordinates   2133973..2134161 (-) Length   62 a.a.
NCBI ID   WP_014573336.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC310     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2128973..2139161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC310_RS11630 (LLUC310_11710) - 2129900..2130709 (-) 810 WP_011677177.1 metal ABC transporter permease -
  LLUC310_RS11635 (LLUC310_11715) - 2130702..2131439 (-) 738 WP_011677178.1 metal ABC transporter ATP-binding protein -
  LLUC310_RS11640 (LLUC310_11720) - 2131618..2132460 (-) 843 WP_011677179.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LLUC310_RS11645 (LLUC310_11725) - 2132457..2132894 (-) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  LLUC310_RS11650 (LLUC310_11730) comGG 2132974..2133336 (-) 363 WP_282675947.1 hypothetical protein Machinery gene
  LLUC310_RS11655 (LLUC310_11735) comGF 2133296..2133742 (-) 447 WP_011836043.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLUC310_RS11660 (LLUC310_11740) comGE 2133705..2133941 (-) 237 WP_014573335.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLUC310_RS11665 (LLUC310_11745) comGD 2133973..2134161 (-) 189 WP_014573336.1 hypothetical protein Machinery gene
  LLUC310_RS11670 (LLUC310_11750) comGC 2134363..2134740 (-) 378 Protein_2127 competence type IV pilus major pilin ComGC -
  LLUC310_RS11675 (LLUC310_11755) comGB 2134758..2135783 (-) 1026 WP_282675955.1 competence type IV pilus assembly protein ComGB Machinery gene
  LLUC310_RS11680 (LLUC310_11760) comGA 2135683..2136663 (-) 981 WP_162494683.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7336.65 Da        Isoelectric Point: 8.3463

>NTDB_id=850801 LLUC310_RS11665 WP_014573336.1 2133973..2134161(-) (comGD) [Lactococcus cremoris strain UC310]
MIYENKEIDIPKEVEMAEFLIIFDEKGGNSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN

Nucleotide


Download         Length: 189 bp        

>NTDB_id=850801 LLUC310_RS11665 WP_014573336.1 2133973..2134161(-) (comGD) [Lactococcus cremoris strain UC310]
TTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTATATTTGATGAGAAAGG
GGGGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGGGGA
GTGGAAAATATAAAAAGAAAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

93.548

100

0.935
  comYD Streptococcus mutans UA140

43.396

85.484

0.371
  comYD Streptococcus mutans UA159

43.396

85.484

0.371