Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LC087_RS11395 Genome accession   NZ_CP129013
Coordinates   2214952..2215971 (-) Length   339 a.a.
NCBI ID   WP_306019576.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2209952..2220971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS11360 (LC087_11360) flgL 2210397..2211278 (-) 882 WP_226541678.1 flagellar hook-associated protein FlgL -
  LC087_RS11365 (LC087_11365) flgK 2211289..2212800 (-) 1512 WP_226541618.1 flagellar hook-associated protein FlgK -
  LC087_RS11370 (LC087_11370) - 2212845..2213321 (-) 477 WP_226541621.1 flagellar protein FlgN -
  LC087_RS11375 (LC087_11375) flgM 2213357..2213638 (-) 282 WP_226541623.1 flagellar biosynthesis anti-sigma factor FlgM -
  LC087_RS11380 (LC087_11380) - 2213666..2214079 (-) 414 WP_306019573.1 TIGR03826 family flagellar region protein -
  LC087_RS11385 (LC087_11385) comFC 2214182..2214721 (-) 540 WP_306019574.1 ComF family protein Machinery gene
  LC087_RS11390 (LC087_11390) - 2214688..2214873 (-) 186 WP_306019575.1 hypothetical protein -
  LC087_RS11395 (LC087_11395) comFA 2214952..2215971 (-) 1020 WP_306019576.1 helicase-related protein Machinery gene
  LC087_RS11400 (LC087_11400) - 2216351..2217195 (-) 845 Protein_2252 DegV family protein -
  LC087_RS11405 (LC087_11405) degU 2217427..2218119 (-) 693 WP_226541631.1 response regulator transcription factor Regulator
  LC087_RS11410 (LC087_11410) degS 2218203..2219363 (-) 1161 WP_226541632.1 sensor histidine kinase Regulator
  LC087_RS11415 (LC087_11415) - 2219741..2220394 (+) 654 WP_226541634.1 YigZ family protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 38081.30 Da        Isoelectric Point: 9.6451

>NTDB_id=850524 LC087_RS11395 WP_306019576.1 2214952..2215971(-) (comFA) [Bacillus carboniphilus strain SaN35-3]
MPRFSQDVCLTWKGILSKSQEYASRKIVETIEKKQSILVWAVCGAGKTEMLFSGIEHALRSGKYVCIASPRKDVIIELFP
RIKESFPRVDVLSIFGESDDRGKISPLVLATTHQLLHYKHAFDVMIIDEVDAFPYSVDRSLAFAVKKACKPQSSFIYLTA
TPSKPFQKQFCHDQNVIIPVRHHGHPLPIPQFVWIGSWKKKLKVANQLNRKVVTWIKEQVSENNQAFLFVPDVSILEEVV
KVLQKIDERIVGVHAEDPNRIEKVSAFRKGEVPVIVTTTILERGVTIKGANVGVLGAESSIFTDRALVQMSGRVGRSKEC
PTGTILFFSLWEVSSYGTS

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=850524 LC087_RS11395 WP_306019576.1 2214952..2215971(-) (comFA) [Bacillus carboniphilus strain SaN35-3]
ATGCCGCGATTTTCACAAGATGTATGTTTAACTTGGAAAGGAATATTATCGAAGTCTCAAGAGTATGCTTCAAGAAAAAT
AGTAGAAACCATTGAAAAGAAGCAATCTATTTTAGTTTGGGCTGTATGTGGTGCTGGGAAAACAGAAATGCTATTTTCAG
GAATTGAACATGCCCTTCGCTCTGGAAAGTATGTGTGCATTGCCTCACCAAGGAAAGATGTGATTATAGAGCTCTTTCCA
CGAATTAAGGAGTCCTTTCCTAGAGTTGATGTATTAAGTATTTTTGGCGAAAGTGATGACCGTGGTAAAATTAGCCCTCT
TGTTCTTGCTACTACCCATCAGCTTCTTCATTACAAACATGCCTTTGATGTCATGATCATTGATGAAGTGGATGCATTTC
CTTATTCTGTTGATCGAAGTTTAGCTTTTGCTGTTAAAAAAGCATGTAAACCTCAGTCCTCCTTCATCTACTTAACAGCC
ACCCCTTCTAAACCCTTTCAAAAACAATTTTGTCACGATCAGAATGTTATTATCCCAGTAAGGCATCATGGCCATCCTTT
GCCGATTCCTCAATTTGTTTGGATTGGTAGTTGGAAGAAAAAATTAAAAGTCGCAAACCAGTTAAACAGAAAAGTGGTGA
CATGGATAAAGGAGCAGGTATCTGAAAATAATCAAGCTTTTTTATTTGTGCCAGACGTGTCTATTCTTGAAGAAGTAGTT
AAAGTTTTACAAAAGATAGATGAAAGAATTGTTGGTGTTCATGCTGAAGATCCGAATCGGATAGAGAAAGTGAGTGCGTT
TAGAAAAGGAGAGGTTCCTGTAATTGTAACAACGACTATATTAGAACGAGGCGTCACTATAAAAGGAGCTAATGTCGGTG
TGTTAGGAGCAGAATCCTCTATTTTCACTGATCGTGCTCTTGTTCAAATGAGCGGAAGAGTGGGAAGAAGTAAAGAATGT
CCAACGGGAACCATTCTCTTTTTTTCACTTTGGGAAGTCAGCAGCTATGGTACAAGCTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(16-163)

Helicase conserved C-terminal domain (Helicase_C)

(218-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.012

97.935

0.519
  comFA Latilactobacillus sakei subsp. sakei 23K

42.945

96.165

0.413
  comFA Lactococcus lactis subsp. cremoris KW2

40.303

97.345

0.392
  comFA/cflA Streptococcus pneumoniae Rx1

39.45

96.46

0.381
  comFA/cflA Streptococcus pneumoniae D39

39.45

96.46

0.381
  comFA/cflA Streptococcus pneumoniae R6

39.45

96.46

0.381
  comFA/cflA Streptococcus pneumoniae TIGR4

39.45

96.46

0.381
  comFA/cflA Streptococcus mitis SK321

38.602

97.05

0.375
  comFA/cflA Streptococcus mitis NCTC 12261

38.532

96.46

0.372