Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LC087_RS11405 Genome accession   NZ_CP129013
Coordinates   2217427..2218119 (-) Length   230 a.a.
NCBI ID   WP_226541631.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2212427..2223119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS11370 (LC087_11370) - 2212845..2213321 (-) 477 WP_226541621.1 flagellar protein FlgN -
  LC087_RS11375 (LC087_11375) flgM 2213357..2213638 (-) 282 WP_226541623.1 flagellar biosynthesis anti-sigma factor FlgM -
  LC087_RS11380 (LC087_11380) - 2213666..2214079 (-) 414 WP_306019573.1 TIGR03826 family flagellar region protein -
  LC087_RS11385 (LC087_11385) comFC 2214182..2214721 (-) 540 WP_306019574.1 ComF family protein Machinery gene
  LC087_RS11390 (LC087_11390) - 2214688..2214873 (-) 186 WP_306019575.1 hypothetical protein -
  LC087_RS11395 (LC087_11395) comFA 2214952..2215971 (-) 1020 WP_306019576.1 helicase-related protein Machinery gene
  LC087_RS11400 (LC087_11400) - 2216351..2217195 (-) 845 Protein_2252 DegV family protein -
  LC087_RS11405 (LC087_11405) degU 2217427..2218119 (-) 693 WP_226541631.1 response regulator transcription factor Regulator
  LC087_RS11410 (LC087_11410) degS 2218203..2219363 (-) 1161 WP_226541632.1 sensor histidine kinase Regulator
  LC087_RS11415 (LC087_11415) - 2219741..2220394 (+) 654 WP_226541634.1 YigZ family protein -
  LC087_RS11420 (LC087_11420) - 2220391..2221371 (+) 981 WP_226541635.1 LCP family protein -
  LC087_RS11425 (LC087_11425) - 2221456..2222205 (-) 750 WP_226541637.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25512.27 Da        Isoelectric Point: 6.1603

>NTDB_id=850525 LC087_RS11405 WP_226541631.1 2217427..2218119(-) (degU) [Bacillus carboniphilus strain SaN35-3]
MSNKKTKIVVIDDHQLFREGVKRILDFEPTFEVVAEGDDGEEALAIVETNNPDVVIMDINMPNVNGVEATKQLVEANPQT
KVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEYRRLAISGTAPKGQVAAIEI
RRPLHILTRRECEVLQMLADGKSNRGIGEGLFISEKTVKNHVSNILQKMSVNDRTQAVVVAIKNGWVEVR

Nucleotide


Download         Length: 693 bp        

>NTDB_id=850525 LC087_RS11405 WP_226541631.1 2217427..2218119(-) (degU) [Bacillus carboniphilus strain SaN35-3]
ATGAGTAATAAAAAAACCAAAATCGTGGTAATTGATGATCATCAATTGTTTAGAGAAGGTGTAAAGAGAATACTAGATTT
TGAACCGACATTTGAAGTGGTGGCAGAGGGTGACGATGGAGAGGAAGCTTTGGCTATTGTGGAAACAAATAATCCTGATG
TTGTGATAATGGATATTAACATGCCAAATGTCAATGGGGTTGAAGCGACAAAACAACTTGTAGAAGCAAATCCACAAACA
AAAGTTATCATTCTGTCCATACACGATGATGAAAACTATGTCACACATGCGTTGAAGACTGGTGCCAGAGGTTATTTGTT
GAAGGAAATGGATGCAGATACCTTAATTGAGGCAGTTAAAGTAGTCGCAGAAGGTGGTTCTTATTTACATCCGAAGGTCA
CACATAATCTAGTCAATGAATATAGAAGACTTGCGATAAGCGGAACGGCTCCAAAGGGACAAGTTGCTGCTATAGAGATT
AGACGTCCTTTACATATATTAACAAGACGAGAATGTGAGGTACTACAAATGCTTGCTGATGGGAAGAGTAACCGAGGAAT
AGGAGAAGGACTCTTTATCAGTGAAAAAACAGTCAAAAACCATGTGAGTAATATTTTACAAAAAATGAGTGTGAATGATC
GAACCCAAGCAGTTGTTGTTGCTATTAAAAATGGTTGGGTAGAGGTTCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(166-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

87.719

99.13

0.87