Detailed information NTG0850526

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: LC087_RS11410
• Genome accession: NZ_CP129013
• Coordinates: 2218203..2219363 (-)
• Length: 386 a.a.
• NCBI ID: WP_226541632.1
• Uniprot ID: -
• Organism: Bacillus carboniphilus strain SaN35-3
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2213203..2224363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LC087_RS11375 (LC087_11375)	flgM	2213357..2213638 (-)	282	WP_226541623.1	flagellar biosynthesis anti-sigma factor FlgM	-
LC087_RS11380 (LC087_11380)	-	2213666..2214079 (-)	414	WP_306019573.1	TIGR03826 family flagellar region protein	-
LC087_RS11385 (LC087_11385)	comFC	2214182..2214721 (-)	540	WP_306019574.1	ComF family protein	Machinery gene
LC087_RS11390 (LC087_11390)	-	2214688..2214873 (-)	186	WP_306019575.1	hypothetical protein	-
LC087_RS11395 (LC087_11395)	comFA	2214952..2215971 (-)	1020	WP_306019576.1	helicase-related protein	Machinery gene
LC087_RS11400 (LC087_11400)	-	2216351..2217195 (-)	845	Protein_2252	DegV family protein	-
LC087_RS11405 (LC087_11405)	degU	2217427..2218119 (-)	693	WP_226541631.1	response regulator transcription factor	Regulator
LC087_RS11410 (LC087_11410)	degS	2218203..2219363 (-)	1161	WP_226541632.1	sensor histidine kinase	Regulator
LC087_RS11415 (LC087_11415)	-	2219741..2220394 (+)	654	WP_226541634.1	YigZ family protein	-
LC087_RS11420 (LC087_11420)	-	2220391..2221371 (+)	981	WP_226541635.1	LCP family protein	-
LC087_RS11425 (LC087_11425)	-	2221456..2222205 (-)	750	WP_226541637.1	glycosyltransferase family 2 protein	-
LC087_RS11430 (LC087_11430)	-	2222282..2223223 (-)	942	WP_226541639.1	hypothetical protein	-

Sequence

Protein

• Length: 386 a.a.
• Molecular weight: 44704.13 Da
• Isoelectric Point: 6.5197

>NTDB_id=850526 LC087_RS11410 WP_226541632.1 2218203..2219363(-) (degS) [Bacillus carboniphilus strain SaN35-3]
MSIQKLDAKLLDKILEKMVKTVHTSKDEIFEIGENSRRQYDDLLQELSNIKIQVNDIIEQGDQLGAHSRLARQRLSEVSK
NFQKYSEPEVHEAYEKAHKLQVDVAMLHQQEKQLRDRRDELERRLVNLKGIIERADSLVGQISVVINYLNQDLRQVGEII
EDAKQKQEFGLRIIEAQEEERKRLSREIHDGPAQMLANVLMRSELIDRISRQQGPEHALEEVRSLRVMVRDALYEVRRII
YDLRPMALDDLGLIPTLRKYLSTIEDYNGKTSIEFSYRGEEDDDHRLPAQFEVALFRLVQEAVTNSLKHAAATKIHVRVE
VKDDLVNLVVKDNGKGFDQSKVNNRNKKSFGLLGMKERVELLEGKMTIDSRPNIGTFIIIQVPLNI

Nucleotide

• Length: 1161 bp

>NTDB_id=850526 LC087_RS11410 WP_226541632.1 2218203..2219363(-) (degS) [Bacillus carboniphilus strain SaN35-3]
TTGAGTATACAAAAACTTGATGCTAAGTTATTGGATAAAATTTTGGAGAAAATGGTTAAGACCGTTCATACTAGTAAGGA
TGAAATATTTGAGATTGGTGAAAATTCTCGAAGACAGTATGATGATTTACTTCAAGAACTAAGCAATATAAAAATTCAAG
TAAATGATATTATTGAACAAGGTGACCAATTAGGTGCTCATTCTAGGCTTGCGAGACAAAGGTTATCCGAAGTAAGTAAA
AACTTCCAAAAATATTCAGAGCCTGAAGTTCATGAAGCATACGAAAAAGCGCATAAGCTGCAAGTGGATGTTGCTATGCT
TCATCAACAGGAGAAACAGCTTCGTGATCGTAGGGACGAACTTGAAAGAAGATTAGTTAACTTGAAAGGAATTATTGAGC
GAGCAGATTCTTTAGTCGGGCAAATATCCGTCGTTATTAACTATTTAAATCAAGACTTGAGGCAAGTGGGAGAAATTATT
GAAGACGCAAAACAAAAACAAGAATTTGGACTAAGAATCATTGAGGCTCAAGAGGAAGAGAGGAAACGACTTTCTCGAGA
AATCCACGATGGACCTGCTCAAATGCTTGCAAATGTATTGATGCGTTCCGAATTAATTGATCGAATCTCGCGTCAACAAG
GACCTGAACATGCCTTAGAAGAAGTGAGAAGCTTACGCGTAATGGTAAGAGATGCGTTATATGAAGTACGGAGGATCATC
TATGATTTAAGGCCAATGGCTCTAGATGATTTAGGATTAATCCCTACTTTGAGAAAGTATTTATCAACGATAGAAGACTA
TAATGGAAAAACGTCCATTGAATTTTCCTATCGTGGAGAAGAAGATGATGATCATCGTTTACCTGCACAGTTCGAAGTAG
CCCTATTTCGTCTAGTTCAAGAAGCCGTTACGAATTCTTTAAAACATGCGGCGGCGACAAAAATACATGTTCGAGTAGAA
GTGAAAGATGACCTAGTGAACCTAGTAGTTAAAGATAATGGTAAAGGATTTGACCAGTCTAAAGTAAACAATCGAAATAA
AAAATCCTTTGGTTTGCTAGGAATGAAGGAACGTGTAGAATTATTAGAGGGGAAAATGACAATTGATTCTCGACCAAACA
TAGGAACATTTATTATAATACAAGTACCACTCAATATTTAG

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (292-385)

• Histidine kinase (HisKA_3) (180-248)

• Sensor protein DegS (DegS) (12-170)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	65.285	100	0.653