Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LC087_RS11385 Genome accession   NZ_CP129013
Coordinates   2214182..2214721 (-) Length   179 a.a.
NCBI ID   WP_306019574.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2209182..2219721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS11350 (LC087_11350) fliW 2209387..2209713 (-) 327 WP_306019572.1 flagellar assembly protein FliW -
  LC087_RS11355 (LC087_11355) - 2209836..2210393 (-) 558 Protein_2243 DUF6470 family protein -
  LC087_RS11360 (LC087_11360) flgL 2210397..2211278 (-) 882 WP_226541678.1 flagellar hook-associated protein FlgL -
  LC087_RS11365 (LC087_11365) flgK 2211289..2212800 (-) 1512 WP_226541618.1 flagellar hook-associated protein FlgK -
  LC087_RS11370 (LC087_11370) - 2212845..2213321 (-) 477 WP_226541621.1 flagellar protein FlgN -
  LC087_RS11375 (LC087_11375) flgM 2213357..2213638 (-) 282 WP_226541623.1 flagellar biosynthesis anti-sigma factor FlgM -
  LC087_RS11380 (LC087_11380) - 2213666..2214079 (-) 414 WP_306019573.1 TIGR03826 family flagellar region protein -
  LC087_RS11385 (LC087_11385) comFC 2214182..2214721 (-) 540 WP_306019574.1 ComF family protein Machinery gene
  LC087_RS11390 (LC087_11390) - 2214688..2214873 (-) 186 WP_306019575.1 hypothetical protein -
  LC087_RS11395 (LC087_11395) comFA 2214952..2215971 (-) 1020 WP_306019576.1 helicase-related protein Machinery gene
  LC087_RS11400 (LC087_11400) - 2216351..2217195 (-) 845 Protein_2252 DegV family protein -
  LC087_RS11405 (LC087_11405) degU 2217427..2218119 (-) 693 WP_226541631.1 response regulator transcription factor Regulator
  LC087_RS11410 (LC087_11410) degS 2218203..2219363 (-) 1161 WP_226541632.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20964.35 Da        Isoelectric Point: 10.0439

>NTDB_id=850523 LC087_RS11385 WP_306019574.1 2214182..2214721(-) (comFC) [Bacillus carboniphilus strain SaN35-3]
MEDTRICRDCLEWNNNDLWKNTLRQNRSVFTYNMFMKDVLATFKYRGDAELVNCFEQPFLEGFKKYYSHKKYQVVPIPIS
PERLRERGFNQALLLAKLLKKPIFEPLGKRNSLKQSKKTKKERIDLKDLYILPSYPSINGYDILLVDDLYTTGSTLRHAS
KILKMNGASSVDSLTLIRS

Nucleotide


Download         Length: 540 bp        

>NTDB_id=850523 LC087_RS11385 WP_306019574.1 2214182..2214721(-) (comFC) [Bacillus carboniphilus strain SaN35-3]
ATGGAGGACACTCGTATTTGTCGTGATTGTTTAGAATGGAATAACAACGACCTGTGGAAAAATACGTTAAGACAAAATCG
TTCTGTTTTCACGTACAATATGTTTATGAAGGATGTATTAGCTACATTTAAATATCGTGGAGATGCGGAACTCGTAAACT
GTTTTGAACAACCATTTTTAGAAGGTTTTAAAAAATACTATAGTCATAAAAAATATCAAGTGGTTCCTATTCCAATAAGT
CCTGAGCGTTTAAGAGAACGAGGTTTTAACCAAGCATTATTACTAGCCAAACTATTAAAAAAACCTATTTTTGAACCTTT
AGGCAAAAGAAATTCTTTAAAACAATCAAAAAAAACGAAAAAAGAAAGAATTGATCTAAAGGACCTATATATATTACCTA
GTTATCCATCAATTAATGGGTATGATATCCTACTAGTTGATGATTTATACACAACAGGATCAACCTTAAGACATGCGTCA
AAAATCCTAAAAATGAATGGGGCATCGTCTGTCGATTCTCTTACATTAATTCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(123-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

50.286

97.765

0.492
  comFC/cflB Streptococcus mitis SK321

37.791

96.089

0.363