Detailed information NTG0850235

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QVG61_RS12420
• Genome accession: NZ_CP128988
• Coordinates: 2683871..2685037 (+)
• Length: 388 a.a.
• NCBI ID: WP_289930957.1
• Uniprot ID: -
• Organism: Thiohalobacter sp. IOR34
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2678871..2690037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVG61_RS12405 (QVG61_12405)	-	2679445..2679666 (-)	222	WP_289930954.1	zinc-finger domain-containing protein	-
QVG61_RS12410 (QVG61_12410)	-	2679695..2680618 (-)	924	WP_289930955.1	branched-chain amino acid transaminase	-
QVG61_RS12415 (QVG61_12415)	glnE	2680790..2683702 (-)	2913	WP_289930956.1	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	-
QVG61_RS12420 (QVG61_12420)	pilU	2683871..2685037 (+)	1167	WP_289930957.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QVG61_RS12425 (QVG61_12425)	-	2686116..2686679 (+)	564	WP_289930958.1	RNA polymerase sigma factor	-
QVG61_RS12430 (QVG61_12430)	-	2686679..2687446 (+)	768	WP_289930959.1	hypothetical protein	-
QVG61_RS12435 (QVG61_12435)	-	2687841..2688554 (+)	714	WP_289930960.1	VPLPA-CTERM sorting domain-containing protein	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 43310.49 Da
• Isoelectric Point: 5.4773

>NTDB_id=850235 QVG61_RS12420 WP_289930957.1 2683871..2685037(+) (pilU) [Thiohalobacter sp. IOR34]
MEFKDYLKIMVLKEASDLYLSSGAPPSVKIHGQMKLVEKATLTPQRIKEIAYSLMDEEQIRQFEKKPEMNLAISETSVGR
FRVNIFRQRNSVGMVVRNIKTEIPHWEGLGLPPILTEIIMSKRGLVLFVGATGSGKSTSLASLIDYRNQHSAGHIITIED
PIEFVHQHKKSIVNQREVGLDTDSYEDALKNTLRQAPDVILIGEIRDRETMEHAITFAETGHLAISTLHANNANQALDRI
INFFPEDRRDQLLLDLSLNLRAFVSQRLIPTTDGKRTAAVEVLLGTPLVQDLIHRGDIHEIKEVMEKSENLGMQTFDSAL
YKLYMAGTIGLEDALRNADSPNNLRLRINLTAEGGEVRLEEEASRLSIAEEAEPQLAAGAGLSLSPTD

Nucleotide

• Length: 1167 bp

>NTDB_id=850235 QVG61_RS12420 WP_289930957.1 2683871..2685037(+) (pilU) [Thiohalobacter sp. IOR34]
ATGGAGTTCAAGGATTATCTGAAGATCATGGTCCTCAAGGAGGCCTCCGACCTCTACCTGAGCTCGGGCGCGCCGCCCAG
CGTGAAGATCCATGGCCAGATGAAGCTCGTCGAGAAGGCGACCCTCACCCCGCAGCGCATCAAGGAAATCGCCTATTCGC
TGATGGACGAGGAACAGATCCGCCAGTTCGAGAAGAAACCGGAGATGAACCTGGCGATCTCCGAGACCAGCGTCGGCCGC
TTCCGCGTCAACATCTTCCGCCAGCGCAACAGTGTCGGCATGGTGGTGCGCAACATCAAGACCGAGATCCCGCACTGGGA
AGGCCTCGGCCTGCCGCCGATCCTCACCGAGATCATCATGTCCAAGCGCGGCCTGGTGCTGTTCGTCGGCGCCACCGGCT
CCGGCAAGTCGACCTCGCTGGCCTCGCTGATCGACTACCGCAACCAGCACTCGGCCGGTCATATCATCACCATCGAGGAC
CCGATCGAATTCGTCCACCAGCACAAGAAATCGATCGTCAATCAGCGCGAGGTCGGGCTCGATACCGATTCCTACGAGGA
CGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCGACCGCGAGACCATGGAGCACG
CCATCACCTTTGCCGAGACCGGCCATCTGGCGATCTCCACCCTGCATGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGAGGACCGCCGCGACCAGCTGCTGCTCGACCTGTCGCTGAACCTGCGCGCCTTCGTCTCCCAGCG
GCTGATCCCCACCACCGATGGCAAGCGCACCGCGGCCGTCGAGGTGCTGCTCGGCACACCGCTGGTCCAGGATCTGATCC
ACCGCGGCGACATCCACGAGATCAAGGAAGTGATGGAGAAGTCGGAAAACCTCGGCATGCAGACCTTCGACAGTGCCCTG
TACAAGCTGTACATGGCCGGCACCATCGGCCTGGAGGATGCGCTGCGCAATGCGGATTCGCCGAACAACCTGCGGCTGCG
GATCAATCTCACCGCCGAGGGTGGCGAGGTGCGGCTGGAGGAAGAGGCCTCGCGGCTGAGCATTGCCGAGGAAGCGGAAC
CGCAGCTCGCGGCGGGCGCCGGCCTGTCGCTTTCTCCCACCGACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (14-268)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	60.734	91.237	0.554
pilU	Acinetobacter baylyi ADP1	57.542	92.268	0.531
pilU	Vibrio cholerae strain A1552	53.89	89.433	0.482
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.348	88.918	0.394
pilT	Neisseria gonorrhoeae MS11	40.58	88.918	0.361
pilT	Neisseria meningitidis 8013	40.58	88.918	0.361