Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | V4942_RS09505 | Genome accession | NZ_CP144687 |
| Coordinates | 1753101..1754291 (+) | Length | 396 a.a. |
| NCBI ID | WP_011174200.1 | Uniprot ID | Q72GK3 |
| Organism | Thermus thermophilus strain TTHB27_delta_cmr4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1748101..1759291
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V4942_RS09480 (V4942_09480) | - | 1748311..1748703 (+) | 393 | WP_011174195.1 | hypothetical protein | - |
| V4942_RS09485 (V4942_09485) | - | 1748700..1749440 (+) | 741 | WP_011174196.1 | Ig-like domain-containing protein | - |
| V4942_RS09490 (V4942_09490) | - | 1749437..1750276 (+) | 840 | WP_011174197.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| V4942_RS09495 (V4942_09495) | - | 1750286..1751473 (+) | 1188 | WP_011174198.1 | hypothetical protein | - |
| V4942_RS09500 (V4942_09500) | pilB/pilB1 | 1751451..1753097 (+) | 1647 | WP_011174199.1 | GspE/PulE family protein | Machinery gene |
| V4942_RS09505 (V4942_09505) | pilC | 1753101..1754291 (+) | 1191 | WP_011174200.1 | type II secretion system F family protein | Machinery gene |
| V4942_RS09510 (V4942_09510) | - | 1754288..1754755 (+) | 468 | WP_011174201.1 | hypothetical protein | - |
| V4942_RS09515 (V4942_09515) | - | 1754723..1755454 (-) | 732 | WP_011174202.1 | pseudouridine synthase | - |
| V4942_RS09520 (V4942_09520) | - | 1755451..1755648 (-) | 198 | WP_041443637.1 | hypothetical protein | - |
| V4942_RS09525 (V4942_09525) | - | 1755668..1756795 (+) | 1128 | WP_011227734.1 | alanine--tRNA ligase-related protein | - |
| V4942_RS09530 (V4942_09530) | - | 1756876..1757547 (+) | 672 | WP_011174204.1 | response regulator transcription factor | - |
| V4942_RS09535 (V4942_09535) | - | 1757544..1758437 (+) | 894 | WP_011174205.1 | ATP-binding protein | - |
| V4942_RS09540 (V4942_09540) | phoU | 1758452..1759114 (+) | 663 | WP_011174206.1 | phosphate signaling complex protein PhoU | - |
Sequence
Protein
Download Length: 396 a.a. Molecular weight: 43906.80 Da Isoelectric Point: 10.1885
>NTDB_id=847418 V4942_RS09505 WP_011174200.1 1753101..1754291(+) (pilC) [Thermus thermophilus strain TTHB27_delta_cmr4]
MRFLYEATDEKGERVYRGVLEAESPQGARRRLREMGLYPLRLERARRPRGGRVPLPELVLFMEEFATLVGAGVPVAQALH
TLSLESRNPLLKEAARGVRERVEGGEALAQAMEHYPEVFPPLVRALVAAAEVGGALEVVLRRTAEYLDKSHDLREKVRTA
LLYPSFVVAVLVLVVAVLLLFVIPVFSRLYGAAGAELPWPTRFLIGASFFLRQNLLWILLFFLGAFYLLRAWRRTPGGAR
ALDGLLLRLPLVGPVLHKAAMARFARTLATLYEGGVLLTQALEATRNTLGNAALAEALDRVLERVVRGESLSAAMSREAL
FLPILVRLALVGEEAGSLDRMLYQAAFHLEREVDYALKRLSSSIEPALTVLLGGIMLVVALALYLPLFDLSRILRR
MRFLYEATDEKGERVYRGVLEAESPQGARRRLREMGLYPLRLERARRPRGGRVPLPELVLFMEEFATLVGAGVPVAQALH
TLSLESRNPLLKEAARGVRERVEGGEALAQAMEHYPEVFPPLVRALVAAAEVGGALEVVLRRTAEYLDKSHDLREKVRTA
LLYPSFVVAVLVLVVAVLLLFVIPVFSRLYGAAGAELPWPTRFLIGASFFLRQNLLWILLFFLGAFYLLRAWRRTPGGAR
ALDGLLLRLPLVGPVLHKAAMARFARTLATLYEGGVLLTQALEATRNTLGNAALAEALDRVLERVVRGESLSAAMSREAL
FLPILVRLALVGEEAGSLDRMLYQAAFHLEREVDYALKRLSSSIEPALTVLLGGIMLVVALALYLPLFDLSRILRR
Nucleotide
Download Length: 1191 bp
>NTDB_id=847418 V4942_RS09505 WP_011174200.1 1753101..1754291(+) (pilC) [Thermus thermophilus strain TTHB27_delta_cmr4]
ATGCGCTTCCTCTACGAGGCCACGGACGAGAAGGGCGAGCGGGTCTACCGCGGGGTCCTGGAGGCGGAAAGCCCCCAAGG
AGCGAGGCGCCGCCTCCGGGAGATGGGCCTTTACCCCTTGCGCCTGGAGCGGGCGAGGCGGCCTAGAGGGGGGCGGGTTC
CCCTGCCCGAGCTCGTCCTCTTCATGGAGGAGTTCGCCACCCTGGTGGGGGCCGGGGTCCCCGTGGCCCAGGCCCTCCAC
ACCCTCTCCCTGGAGAGCCGGAACCCCCTCCTCAAGGAGGCGGCCCGGGGGGTGCGGGAGCGGGTGGAGGGAGGGGAGGC
CCTGGCCCAGGCCATGGAGCACTACCCCGAGGTCTTCCCCCCCTTGGTGCGGGCCTTGGTGGCGGCGGCCGAGGTGGGTG
GGGCCTTGGAGGTGGTGCTGAGGCGCACCGCCGAGTACCTGGACAAGAGCCACGACCTGCGGGAGAAGGTGCGCACCGCC
CTCCTCTACCCTTCCTTCGTGGTGGCCGTCCTGGTCCTGGTGGTCGCCGTCCTCCTCCTCTTCGTCATCCCCGTCTTCTC
CCGGCTTTATGGGGCAGCGGGGGCGGAGCTTCCCTGGCCCACCCGCTTCCTGATCGGCGCCTCCTTCTTCCTGCGGCAGA
ACCTGCTCTGGATCCTCCTCTTCTTCCTGGGCGCCTTCTACCTCCTTCGGGCCTGGCGCCGGACCCCGGGAGGGGCGAGG
GCCCTGGACGGCCTTCTCCTCCGCCTCCCCCTCGTGGGCCCCGTCCTCCACAAGGCGGCCATGGCCCGCTTCGCCCGCAC
CCTGGCCACCCTGTACGAGGGCGGGGTGCTCCTCACCCAGGCCCTCGAGGCCACCCGGAACACCTTGGGCAACGCCGCCT
TGGCCGAGGCCCTGGACCGGGTGCTGGAGCGGGTGGTGCGCGGGGAGTCCTTAAGCGCCGCCATGAGCCGGGAAGCCCTC
TTCCTCCCCATCCTGGTGCGGCTTGCCCTGGTGGGGGAGGAGGCAGGGAGCCTGGACCGGATGCTCTACCAGGCGGCCTT
CCACCTGGAGCGCGAGGTGGACTACGCCCTCAAGCGGCTTTCCTCCAGCATTGAGCCCGCCCTCACCGTGCTTCTCGGGG
GTATAATGCTCGTGGTCGCCCTCGCCCTGTATCTGCCCCTCTTTGACCTGTCCCGGATCCTGCGCCGATGA
ATGCGCTTCCTCTACGAGGCCACGGACGAGAAGGGCGAGCGGGTCTACCGCGGGGTCCTGGAGGCGGAAAGCCCCCAAGG
AGCGAGGCGCCGCCTCCGGGAGATGGGCCTTTACCCCTTGCGCCTGGAGCGGGCGAGGCGGCCTAGAGGGGGGCGGGTTC
CCCTGCCCGAGCTCGTCCTCTTCATGGAGGAGTTCGCCACCCTGGTGGGGGCCGGGGTCCCCGTGGCCCAGGCCCTCCAC
ACCCTCTCCCTGGAGAGCCGGAACCCCCTCCTCAAGGAGGCGGCCCGGGGGGTGCGGGAGCGGGTGGAGGGAGGGGAGGC
CCTGGCCCAGGCCATGGAGCACTACCCCGAGGTCTTCCCCCCCTTGGTGCGGGCCTTGGTGGCGGCGGCCGAGGTGGGTG
GGGCCTTGGAGGTGGTGCTGAGGCGCACCGCCGAGTACCTGGACAAGAGCCACGACCTGCGGGAGAAGGTGCGCACCGCC
CTCCTCTACCCTTCCTTCGTGGTGGCCGTCCTGGTCCTGGTGGTCGCCGTCCTCCTCCTCTTCGTCATCCCCGTCTTCTC
CCGGCTTTATGGGGCAGCGGGGGCGGAGCTTCCCTGGCCCACCCGCTTCCTGATCGGCGCCTCCTTCTTCCTGCGGCAGA
ACCTGCTCTGGATCCTCCTCTTCTTCCTGGGCGCCTTCTACCTCCTTCGGGCCTGGCGCCGGACCCCGGGAGGGGCGAGG
GCCCTGGACGGCCTTCTCCTCCGCCTCCCCCTCGTGGGCCCCGTCCTCCACAAGGCGGCCATGGCCCGCTTCGCCCGCAC
CCTGGCCACCCTGTACGAGGGCGGGGTGCTCCTCACCCAGGCCCTCGAGGCCACCCGGAACACCTTGGGCAACGCCGCCT
TGGCCGAGGCCCTGGACCGGGTGCTGGAGCGGGTGGTGCGCGGGGAGTCCTTAAGCGCCGCCATGAGCCGGGAAGCCCTC
TTCCTCCCCATCCTGGTGCGGCTTGCCCTGGTGGGGGAGGAGGCAGGGAGCCTGGACCGGATGCTCTACCAGGCGGCCTT
CCACCTGGAGCGCGAGGTGGACTACGCCCTCAAGCGGCTTTCCTCCAGCATTGAGCCCGCCCTCACCGTGCTTCTCGGGG
GTATAATGCTCGTGGTCGCCCTCGCCCTGTATCTGCCCCTCTTTGACCTGTCCCGGATCCTGCGCCGATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
35.91 |
100 |
0.364 |