Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   QSV38_RS06525 Genome accession   NZ_CP128410
Coordinates   1242705..1243886 (+) Length   393 a.a.
NCBI ID   WP_277837634.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1237705..1248886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS06495 (QSV38_06495) - 1238335..1240914 (+) 2580 WP_289647061.1 YfhO family protein -
  QSV38_RS06515 (QSV38_06515) - 1241343..1242005 (-) 663 WP_289647062.1 YoaK family protein -
  QSV38_RS06520 (QSV38_06520) rlmH 1242033..1242512 (-) 480 WP_289647063.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  QSV38_RS06525 (QSV38_06525) htrA 1242705..1243886 (+) 1182 WP_277837634.1 trypsin-like peptidase domain-containing protein Regulator
  QSV38_RS06530 (QSV38_06530) spo0J 1243949..1244707 (+) 759 WP_289647064.1 ParB/RepB/Spo0J family partition protein Regulator
  QSV38_RS06535 (QSV38_06535) dnaA 1244909..1246273 (+) 1365 WP_289647065.1 chromosomal replication initiator protein DnaA -
  QSV38_RS06540 (QSV38_06540) dnaN 1246428..1247564 (+) 1137 WP_217374447.1 DNA polymerase III subunit beta -
  QSV38_RS06545 (QSV38_06545) - 1247656..1247907 (+) 252 WP_254451614.1 hypothetical protein -
  QSV38_RS06550 (QSV38_06550) - 1247969..1248310 (+) 342 WP_254451615.1 hypothetical protein -
  QSV38_RS06555 (QSV38_06555) - 1248320..1248523 (+) 204 WP_217374448.1 DUF951 family protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 41158.92 Da        Isoelectric Point: 4.2375

>NTDB_id=847319 QSV38_RS06525 WP_277837634.1 1242705..1243886(+) (htrA) [Streptococcus parasuis strain 7500]
MKKLLKFVILFVVGFLGGIGGYYFASSTLTQGNSTSNQANTTSVSNVQYSNDTSTTQAVEKVQDAVVSVINYQTQSSNSV
SSIFGNIESSDELAVAGEGSGVIYKKDGDTAYIVTNNHVISGAEKIDILLASGEKLSGELVGADTYSDIAVIKIAADKVT
TIAEFANSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQTEDGQTISTNAIQTDAAINPGNSGGPLINIQGQ
VIGINSSKITSSSVSSSGVAIEGMGFAIPSNDVVQIINQLETNGKVIRPALGVQMVNLTDLSTSQLEKVGLANTDLTSGV
LIVSTQPGLPADGKFEPYDVIIEIDGETIENKSDLQSELYKHQIGDTITVTYYRNNKKMTVDIKLTHSTDDLS

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=847319 QSV38_RS06525 WP_277837634.1 1242705..1243886(+) (htrA) [Streptococcus parasuis strain 7500]
ATGAAAAAATTATTGAAATTTGTTATTTTGTTTGTTGTTGGATTTTTAGGAGGAATTGGTGGGTATTACTTTGCTTCATC
AACTCTGACTCAAGGAAATTCTACTTCAAATCAAGCAAATACAACCAGTGTAAGCAATGTCCAATATAGCAACGATACTT
CCACCACTCAAGCTGTGGAAAAAGTTCAAGATGCTGTTGTCTCCGTTATCAATTATCAAACTCAATCATCGAATAGCGTC
AGTTCTATTTTTGGTAACATTGAAAGTTCAGATGAGCTAGCTGTTGCTGGAGAAGGTTCAGGTGTTATTTATAAAAAAGA
TGGTGATACAGCATATATTGTTACAAACAACCACGTAATTTCAGGTGCTGAAAAAATCGATATACTTTTGGCTTCTGGAG
AAAAGCTTAGCGGAGAACTCGTAGGTGCAGATACTTATTCAGACATTGCTGTTATCAAAATTGCTGCAGATAAAGTGACC
ACTATTGCTGAATTTGCTAATTCAGACACAATTAAAGTTGGAGAAACTGCGATTGCAATTGGTAGCCCATTAGGAAGTGT
CTATGCAAATACAGTAACCCAGGGGATTATTTCTAGTCTCAGTCGTACAGTAACTTCACAAACAGAAGATGGCCAAACAA
TCTCAACAAATGCTATCCAGACTGATGCAGCCATTAACCCAGGTAACTCAGGTGGACCACTTATCAATATTCAAGGACAA
GTTATCGGTATCAACTCAAGTAAAATAACCTCTAGTTCTGTCAGCAGTTCAGGAGTTGCAATAGAAGGAATGGGCTTTGC
AATTCCCTCAAATGATGTTGTACAGATTATTAATCAATTAGAAACAAATGGTAAAGTTATTCGTCCAGCTCTTGGTGTAC
AAATGGTCAATCTAACAGACCTATCTACTAGTCAATTAGAAAAAGTAGGATTAGCAAATACAGACTTAACATCTGGAGTA
CTAATTGTATCTACTCAACCAGGTTTGCCAGCTGATGGAAAATTTGAACCATATGATGTCATTATTGAAATCGATGGTGA
AACCATTGAAAATAAGAGTGATTTACAAAGTGAACTTTACAAGCATCAAATTGGCGACACCATAACTGTTACCTATTATA
GAAATAATAAGAAAATGACTGTTGACATTAAGTTGACACATTCAACGGATGATTTGTCATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(289-385)

Trypsin-like peptidase domain (Trypsin_2)

(99-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.111

100

0.616
  htrA Streptococcus gordonii str. Challis substr. CH1

60.406

100

0.606
  htrA Streptococcus pneumoniae Rx1

57.398

99.746

0.573
  htrA Streptococcus pneumoniae TIGR4

57.398

99.746

0.573
  htrA Streptococcus pneumoniae D39

57.398

99.746

0.573
  htrA Streptococcus pneumoniae R6

57.398

99.746

0.573
  htrA Streptococcus mitis NCTC 12261

56.888

99.746

0.567